View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16434_high_12 (Length: 268)
Name: NF16434_high_12
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16434_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 43556771 - 43556529
Alignment:
| Q |
18 |
atcatccgcaagggtaataatatttttccgctattcataattcagaagtataccaaatgaatgttaaaaccgtttcnnnnnnnnn---aaatagtgtact |
114 |
Q |
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| T |
43556771 |
atcatccgcaagggtaataatatttttccgctattcataattcagaagtataccaaatgaatgttaaaaccgttttttttttttttttaaatagtgtact |
43556672 |
T |
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| Q |
115 |
agaagatgaaatatgtatggaacaatttgtaagttagataattttttgtatgatattaaacaagactcaaagaaatggaatgaaatttttgacaacttaa |
214 |
Q |
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| T |
43556671 |
agaagatgaaatatgtatggaacaatttgtaagttagataattttttgtatgatcttaaagaagactcaaagaaatggaatgaaatttttgacaacttaa |
43556572 |
T |
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| Q |
215 |
tgatgtcaaatgattttaaagtgaatgagagtgataaatatga |
257 |
Q |
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| T |
43556571 |
taacatcaaatggttttaaagtgaatgagagtgacaaatatga |
43556529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 43556525 - 43556465
Alignment:
| Q |
196 |
gaaatttttgacaacttaatgatgtcaaat-gattttaaagtgaatgagagtgataaatat |
255 |
Q |
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| T |
43556525 |
gaaatttttgacaacttaatgatatcaaatggtttttaaagtgaatgagagtgacaaatat |
43556465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 24944086 - 24944194
Alignment:
| Q |
145 |
aagttagataattttttgtatgatattaaacaagactcaaagaaatggaatgaaatttttgacaacttaatgatgtcaaatgattttaaagtgaatgaga |
244 |
Q |
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| T |
24944086 |
aagttagataagtctttgtatggtttgaagcaaacctctaagcaatggcatgaaaattttgacaacctaatgataacaaatgggttcaaggtgaatgaaa |
24944185 |
T |
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| Q |
245 |
gtgataaat |
253 |
Q |
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| T |
24944186 |
gtgataaat |
24944194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 5522145 - 5522085
Alignment:
| Q |
194 |
atgaaatttttgacaacttaatgatgtcaaatgattttaaagtgaatgagagtgataaata |
254 |
Q |
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| T |
5522145 |
atgaaatgtttgacaacgtaatgataacaaatgagttcaaagtgaatgaaagtgacaaata |
5522085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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