View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16434_high_3 (Length: 520)
Name: NF16434_high_3
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16434_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 36223082 - 36222598
Alignment:
| Q |
18 |
taaaggtagaaaagtaaaaagtatatctaaatggattcgtatccacttccatgatgcaacgctgcgatannnnnnnaactaggacaacataccacttcac |
117 |
Q |
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| T |
36223082 |
taaaggtagaaaagtaaaaagtatatctaaatggattcgtatccacttccatgatgcaacgctgcgatatttttttaactaggacaacataccacttcac |
36222983 |
T |
|
| Q |
118 |
gtggtagtcctttttaacacgaaaaagaaattgttgcaccgctgcatcgtggcagagaatctgaatcctagttaaataccactgtctaatagattctata |
217 |
Q |
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| T |
36222982 |
gtggtagtcctttttaacatgaaaaagaaattgttgcaccgctgcatcgtgggagagaatctgaatcctagttaaataccactgtctaatagattctata |
36222883 |
T |
|
| Q |
218 |
aactcaagtgtattaatgcaaagacactactcaagatttacctatttcaaatttannnnnnngcaggctcaacctgatagggatcctgtgaaagaaaagt |
317 |
Q |
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| T |
36222882 |
aactcaagtgtattaatgcaaagacactactcaagatttacctatttcaaatttatttttttacaggctcaacctgatagggatcctgtgaaagaaaagt |
36222783 |
T |
|
| Q |
318 |
ggatgataggaattatggtgacagccacagttgtaaaaattgggctgatgacatactgtcgcaggttcaaaaatgaaatagttagagcctatgctcaaga |
417 |
Q |
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| T |
36222782 |
ggatgataggaattatggtgacagccacagttgtaaaaattgggctgatgacatactgtcgcaggttcaaaaatgaaatagttagagcctatgctcaaga |
36222683 |
T |
|
| Q |
418 |
ccatttctttgatgtcattacaaactcaattggtctagccacggcagtgctagccatcaaattctattggtggcttgaccctctt |
502 |
Q |
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| T |
36222682 |
ccatttctttgatgtcattacaaactcgattggtctagccacggcagtgctagccatcaaattctattggtggcttgaccctctt |
36222598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 6577926 - 6577878
Alignment:
| Q |
324 |
taggaattatggtgacagccacagttgtaaaaattgggctgatgacata |
372 |
Q |
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| T |
6577926 |
taggaattatggtgacagccacagttgtaaaaattgggctcatgacata |
6577878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 372
Target Start/End: Original strand, 22637287 - 22637335
Alignment:
| Q |
324 |
taggaattatggtgacagccacagttgtaaaaattgggctgatgacata |
372 |
Q |
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| T |
22637287 |
taggaattatggtgacagccaaagttgtaaaaattgggctcatgacata |
22637335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 276698 - 276650
Alignment:
| Q |
324 |
taggaattatggtgacagccacagttgtaaaaattgggctgatgacata |
372 |
Q |
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| T |
276698 |
taggaattatggtgacagccacagttgtaaaaattgggctcatgacata |
276650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 29709573 - 29709525
Alignment:
| Q |
324 |
taggaattatggtgacagccacagttgtaaaaattgggctgatgacata |
372 |
Q |
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| T |
29709573 |
taggaattatggtgacagccacagttgtaaaaattgggctcatgacata |
29709525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 325 - 372
Target Start/End: Original strand, 871512 - 871559
Alignment:
| Q |
325 |
aggaattatggtgacagccacagttgtaaaaattgggctgatgacata |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
871512 |
aggaattatggtgacagccacagttgtaaaaattgggctcatgacata |
871559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 25127668 - 25127620
Alignment:
| Q |
324 |
taggaattatggtgacagccacagttgtaaaaattgggctgatgacata |
372 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
25127668 |
taggaattatggtgacaaccacagttgtaaaaattgggctcatgacata |
25127620 |
T |
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