View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16434_high_8 (Length: 308)

Name: NF16434_high_8
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16434_high_8
NF16434_high_8
[»] chr8 (1 HSPs)
chr8 (9-299)||(45347345-45347638)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 45347345 - 45347638
Alignment:
Q  9 gagagatgaaaagagggtcgaacacgttgatggtaccatgcaattgtgaagccattacctctcattcattttccttgttagttttaacactacaaataaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45347345 gagagatgaaaagagggtcgaacacgttgatggtaccatgcaattgtgaagccattacctctcattcattttccttgttagttttaacgctacaaataaa 45347444  T
Q  109 acctttgcttgtcaacctatctcaatttgactcttccttccttccttcctgtgtgcctcacaacttacacataatctctccctcccaacccgaggattca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45347445 acctttgcttgtcaacctatctcaatttgactcttccttccttccttcctgtgtgcctcacaacttacacataatctctcccccccaacccgaggattca 45347544  T
Q  209 aatatttacctgtcaactttctataacaaccacctgaaataaccgacttctggtgggctcattgttcaa---tattgtttcattttccactttt 299  Q
    |||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||   ||||||||||||||||| ||||    
T  45347545 aatatttaactgtcaactttctataacaaccacctgaaataaccgaactctggtgggctcattgttcaatattattgtttcattttccaatttt 45347638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University