View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16434_low_10 (Length: 308)

Name: NF16434_low_10
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16434_low_10
NF16434_low_10
[»] chr8 (1 HSPs)
chr8 (9-299)||(45347345-45347638)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 45347345 - 45347638
Alignment:
Q  9 gagagatgaaaagagggtcgaacacgttgatggtaccatgcaattgtgaagccattacctctcattcattttccttgttagttttaacactacaaataaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45347345 gagagatgaaaagagggtcgaacacgttgatggtaccatgcaattgtgaagccattacctctcattcattttccttgttagttttaacgctacaaataaa 45347444  T
Q  109 acctttgcttgtcaacctatctcaatttgactcttccttccttccttcctgtgtgcctcacaacttacacataatctctccctcccaacccgaggattca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45347445 acctttgcttgtcaacctatctcaatttgactcttccttccttccttcctgtgtgcctcacaacttacacataatctctcccccccaacccgaggattca 45347544  T
Q  209 aatatttacctgtcaactttctataacaaccacctgaaataaccgacttctggtgggctcattgttcaa---tattgtttcattttccactttt 299  Q
    |||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||   ||||||||||||||||| ||||    
T  45347545 aatatttaactgtcaactttctataacaaccacctgaaataaccgaactctggtgggctcattgttcaatattattgtttcattttccaatttt 45347638  T

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