View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16434_low_11 (Length: 299)
Name: NF16434_low_11
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16434_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 11848432 - 11848149
Alignment:
| Q |
1 |
tagaaggaatttgccactgagaaaaagggttagaatcaattaccacctctatcaaattactcatgttggtgaagaaatcactaggcatggaagtgaaact |
100 |
Q |
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| T |
11848432 |
tagaaggaatttgccactgagaaaaagggttagaatcaattaccacctctatcaaattactcatgttggtgaagaaatcactaggcatggaagtgaaact |
11848333 |
T |
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| Q |
101 |
gttgtttctgatatacaagttctgaagtgaatttggcatgtatggaaaacctccagaaaactcattttcactgcaatcgaaacgagttaaagcagtgagt |
200 |
Q |
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| T |
11848332 |
gttgtttctgatatacaagttctgaagtgaatttggcatgtatggaaaacctccagaaaactcattttcactgcaatcgaaacgagttaaagcagtgagt |
11848233 |
T |
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| Q |
201 |
tgcattaattcttttggtaaagaaccttgaatattgagttgtcctaaattaatttcagtgaccgtcgttccgctacatgaaact |
284 |
Q |
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| T |
11848232 |
tgcattaattcttttggtaaagaaccttgaatattgagttgtcctaaattaatttcagtgaccgtcgttccgctgcatgaaact |
11848149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 11858718 - 11858952
Alignment:
| Q |
1 |
tagaaggaatttgccactgagaaaaagggttagaatcaattaccacctctatcaaattactcatgttggtgaagaaatcactaggcatggaagtgaaact |
100 |
Q |
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||||||||||||||||||||| |||||||||| || |||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | |
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| T |
11858718 |
tagaaggaatttgccactgaggaaaagggttataaccaatactcacctctatcaaattactcatgtttgtgaagaaatcacttggcatggaagtgaaatt |
11858817 |
T |
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| Q |
101 |
gttgtttctgatatacaagttctgaagtgaatttggcatgtatggaaaacctccagaaaactcattttcactgcaatcgaaacgagttaaagcagtgagt |
200 |
Q |
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| T |
11858818 |
gttgttgttaatatacaaaaactgaagtgaacttggcatgtaaggaaaatcaccagataaagcgtttccattgcactcaaaacgatttaactgagtgagt |
11858917 |
T |
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| Q |
201 |
tgcattaattcttttggtaaagaaccttgaatatt |
235 |
Q |
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| T |
11858918 |
tgcaccaattcttttggtaaagaaccttgaatatt |
11858952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 11835046 - 11834815
Alignment:
| Q |
1 |
tagaaggaatttgccactgagaaaaagggttagaatcaattaccacctctatcaaattactcatgttggtgaagaaatcactaggcatggaagtgaaact |
100 |
Q |
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|||||||||||||||| |||| |||||||||| || |||| ||| || ||||||||||||||||||| |||||||||||| ||||| |||| |||| | |
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| T |
11835046 |
tagaaggaatttgccattgaggaaaagggttataaccaatactcacatcaatcaaattactcatgttggcgaagaaatcactcggcatcgaagcgaaatt |
11834947 |
T |
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| Q |
101 |
gttgtttctgatatacaagttctgaagtgaatttggcatgtatggaaaacctccaga-aaactcattttcactgcaatcgaaacgagttaaagcagtgag |
199 |
Q |
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| T |
11834946 |
gttgttaccaatagacaaatgctgaagtgaaattggcatgtaaggaaaatcaccagataaact-gtttccattgcattcaaaccgagttaactcagtgag |
11834848 |
T |
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| Q |
200 |
ttgcattaattcttttggtaaagaaccttgaat |
232 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
11834847 |
ttgcatcaattcttttggtaaagaaccttgaat |
11834815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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