View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16434_low_12 (Length: 297)
Name: NF16434_low_12
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16434_low_12 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 35203818 - 35204080
Alignment:
| Q |
18 |
atatcataacaatctcatacttgtttcctcaatcaccaaaaatcttatttactcatcacgtcatctgcatttaagaatcaaaatccacaatatcattaac |
117 |
Q |
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| T |
35203818 |
atatcataacaatctcatacttgtttcctcaatcaccaaaaatcttgtttactcatcacttcatctgcatttaagaatcaaaatccacaatatcattaac |
35203917 |
T |
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| Q |
118 |
cttaccttaacctcataaaattagttcccagaccagaatgttctcacagcatgaaataaattagtctaacttcaagccattacaccaaactttaattctc |
217 |
Q |
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| T |
35203918 |
cttaccttaacctcataaaattagttcccagaccagaatgttctcacagcatgaaataaattagtctaacttcaagccattacaccaaactttaattctc |
35204017 |
T |
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| Q |
218 |
ttaagcttccaatttgagtattacatttgatattgctacaccaagtatgacaagtgtaaatta |
280 |
Q |
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| T |
35204018 |
ttaagcttccaatttgagtattacatttgatattgctacaccaaatatgacaagtgtaaatta |
35204080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 21217518 - 21217608
Alignment:
| Q |
149 |
accagaatgttctcacagcatgaaataaattagtctaacttcaagccattacaccaaactttaattctcttaagcttccaatttgagtatta |
240 |
Q |
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| T |
21217518 |
accagaatgttctaacagcataaaatgaattattccaaattcaagccattatgccgaa-ttttactctcttaagctttcaatttgagtatta |
21217608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 4649 - 4599
Alignment:
| Q |
149 |
accagaatgttctcacagcatgaaataaattagtctaacttcaagccatta |
199 |
Q |
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||||||||||||| | |||||||||||||||||||||||| |||| |||| |
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| T |
4649 |
accagaatgttctaatcgcatgaaataaattagtctaacttaaagctatta |
4599 |
T |
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