View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16434_low_13 (Length: 284)
Name: NF16434_low_13
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16434_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 27 - 277
Target Start/End: Original strand, 26801654 - 26801904
Alignment:
| Q |
27 |
ctccaagtaaactatagtcagcacattagttatattacatatgcttttaagcatacataataataactttcaatttatgtcttgagaacttgtagggtca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26801654 |
ctccaagtaaactatagtcagcacattagttatattacatatgcttttaagcatacataataataactttcaatttatgtcttgagaacttgtagggtca |
26801753 |
T |
|
| Q |
127 |
attaatctcttatatggctgccaataatgtgcattgcaagtgcctgtggcaagtgattaagtggtcatttgttaggccagctgcctgcataaatgaatga |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26801754 |
attaatctcttatatggctgccaataatgtgcattgcaagtgcctgtggcaagtgattaagtggtcatttgttaggccagctgcctgcataaatgaatga |
26801853 |
T |
|
| Q |
227 |
accactgttggaccaacatatctaaaccctctcttaatcatgcctttgctt |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26801854 |
accactgttggaccaacatatctaaaccctctcttaatcatgtctttgctt |
26801904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 18415504 - 18415633
Alignment:
| Q |
148 |
caataatgtgcattgcaagtgcctgtggcaagtgattaagtggtcatttgttaggccagctgcctgcataaatgaatgaaccactgttggaccaacatat |
247 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||| || || |||||||| |||||||| ||||| |||||||| || || ||| | |
|
|
| T |
18415504 |
caataatgtgcatttcaagtggctgtggcaagtgattaagtggtcattggtgagaccagctgcttgcataaacgaatgtaccactgtggggcctacaaac |
18415603 |
T |
|
| Q |
248 |
ctaaaccctctcttaatcatgcctttgctt |
277 |
Q |
| |
|
||||| ||||| | |||||| |||||||| |
|
|
| T |
18415604 |
ctaaaacctcttctgatcatgtctttgctt |
18415633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University