View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16434_low_16 (Length: 224)
Name: NF16434_low_16
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16434_low_16 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 22631719 - 22631527
Alignment:
| Q |
17 |
accaaaaactctaaatatttacattttttctctataaggatggagcatataactctttttgttggttcttgaagcttctttatttgataattttcaatgc |
116 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22631719 |
accaaaaactctaaatatctgcattttttctctataaggatggagcatataactctttttgtttgttcttgaagcttctttatttgataattttcaatgc |
22631620 |
T |
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| Q |
117 |
aatgctttcctagagaaaccttttgatgcatgaagttggaatcaggtacttcttttgcaagtggtctcaaatgtctaatcctccaatatctct |
209 |
Q |
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| T |
22631619 |
aatgctttcctagagaaaccttttgatgcatgacgttggaatcaggtactgcttttgtaagtggtctcaaatgtctaatcctccaatatctct |
22631527 |
T |
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Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 23120821 - 23121000
Alignment:
| Q |
20 |
aaaaactctaaatatttacattttttctctataaggatggagcatataactctttttgttggttcttgaagcttctttatttgataattttcaatgcaat |
119 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23120821 |
aaaaattctaaatatctacattttttctctataaggatggagcatataactctttttg----------aagcttctttatttgataattttcaatgcaat |
23120910 |
T |
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| Q |
120 |
gctttcctagagaaaccttttgatgcatgaagttggaatcaggtacttcttttgcaagtggtctcaaatgtctaatcctccaatatctct |
209 |
Q |
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| T |
23120911 |
gctttcctagagaaaccttttgatgcatgacgttggaatcaggtacttcttttgcaagtggtctcaaatgtctaatcctccaatatctct |
23121000 |
T |
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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 27366948 - 27366784
Alignment:
| Q |
21 |
aaaactctaaatatttacattttttc-tctataaggatggagcatataactctttttgttggttcttgaagcttctttatttgataattttcaatgcaat |
119 |
Q |
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|||||||||||||| |||||||||| |||||||||||||| ||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
27366948 |
aaaactctaaatatctacatttttttatctataaggatggaccatataactctttctcttggttctttaagcttcttgatttgataattttcaatgcaat |
27366849 |
T |
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| Q |
120 |
gctttcctagagaaaccttttgatgcatgaagttggaatcaggtacttcttttgcaagtggtctcaaat |
188 |
Q |
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||| ||||||||||||||||||||||| |||||| ||||||||| ||||||| || |||| |||| |
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| T |
27366848 |
gct----tagagaaaccttttgatgcatgacattggaaacaggtacttattttgcatgtagtctaaaat |
27366784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 27457295 - 27457131
Alignment:
| Q |
21 |
aaaactctaaatatttacattttttc-tctataaggatggagcatataactctttttgttggttcttgaagcttctttatttgataattttcaatgcaat |
119 |
Q |
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|||||||||||||| |||||||||| |||||||||||||| ||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
27457295 |
aaaactctaaatatctacatttttttatctataaggatggaccatataactctttctcttggttctttaagcttcttgatttgataattttcaatgcaat |
27457196 |
T |
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| Q |
120 |
gctttcctagagaaaccttttgatgcatgaagttggaatcaggtacttcttttgcaagtggtctcaaat |
188 |
Q |
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||| ||||||||||||||||||||||| |||||| ||||||||| ||||||| || |||| |||| |
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| T |
27457195 |
gct----tagagaaaccttttgatgcatgacattggaaacaggtacttattttgcatgtagtctaaaat |
27457131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 45074092 - 45074251
Alignment:
| Q |
20 |
aaaaactctaaatatttacatttt--ttctctataaggatggagcatataactctttttgttggttcttgaagcttctttatttgataattttcaatgca |
117 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| | ||||||| | ||||||||| |||||||||||||||||||| |
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| T |
45074092 |
aaaaactctaaatatctacattttttttctctataaggatggaccatataactctttctcttggttccttaagcttcttgatttgataattttcaatgca |
45074191 |
T |
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| Q |
118 |
atgctttcctagagaaaccttttgatgcatgaagttggaatcaggtacttcttttgcaagtggt |
181 |
Q |
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||||| ||||||||||||||||||||||| |||||| ||| ||||| ||||||| ||||| |
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| T |
45074192 |
atgct----tagagaaaccttttgatgcatgacattggaaacagatacttattttgcatgtggt |
45074251 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 51094314 - 51094236
Alignment:
| Q |
109 |
ttcaatgcaatgctttcctagagaaaccttttgatgcatgaagttggaatcaggtacttcttttgcaagtggtctcaaa |
187 |
Q |
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||||||| |||||||| ||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||| |
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| T |
51094314 |
ttcaatgttatgctttcgtagagaaaccttttgtagcatgacgttagatagaggtacttcttttgcaagtggtctcaaa |
51094236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 51094359 - 51094322
Alignment:
| Q |
17 |
accaaaaactctaaatatttacattttttctctataag |
54 |
Q |
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||||||||||||| |||| ||||||||||||||||||| |
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| T |
51094359 |
accaaaaactctagatatctacattttttctctataag |
51094322 |
T |
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Target: scaffold0179 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 28123 - 28038
Alignment:
| Q |
103 |
ataattttcaatgcaatgctttcctagagaaaccttttgatgcatgaagttggaatcaggtacttcttttgcaagtggtctcaaat |
188 |
Q |
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||||||||||||| |||||||| ||||||||||||||| || |||| ||| || ||||| |||||||| | |||||||||||| |
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| T |
28123 |
ataattttcaatgttatgctttcgtagagaaaccttttgttgtatgacgttagatagaggtatttcttttgtaggtggtctcaaat |
28038 |
T |
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