View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16434_low_17 (Length: 220)
Name: NF16434_low_17
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16434_low_17 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 23121187 - 23120977
Alignment:
| Q |
10 |
ataatactcatcgtcaggtcatgtgcttcctttaattgatgtgttctttttagttgatttttgtttaaagtgacttgaacaaagtgtggttggctattaa |
109 |
Q |
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| T |
23121187 |
ataatattcatcgtcatgtcatgtgctccctttaattgatgtgttctttttagttgatttttgtttaaagtgacttgaacaaagtgtggttggccattaa |
23121088 |
T |
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| Q |
110 |
taaatagatgattgtttaagtagatggctacaacagttgtagccacattttaaatttttaagaaggcaattaagaaagagaaggattagagatattggag |
209 |
Q |
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| T |
23121087 |
taaatagatgattgtttaagtagatggctacaacagttgcagccacattttaaatttctaagaaggcaactaagaaagagaaggattagagatattggag |
23120988 |
T |
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| Q |
210 |
gattagacatt |
220 |
Q |
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| T |
23120987 |
gattagacatt |
23120977 |
T |
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Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 22631352 - 22631550
Alignment:
| Q |
22 |
gtcaggtcatgtgcttcctttaattgatgtgttctttttagttgatttttgtttaaagtgacttgaacaaagtgtggttggctattaataaatagatgat |
121 |
Q |
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| T |
22631352 |
gtcatgtcatgtgctccctttaattgatgtgttctttttagttgatttttgtttaaagtgacttgaacaaagtgtggttggccattaataaatatatgat |
22631451 |
T |
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| Q |
122 |
tgtttaagtagatggctacaacagttgtagccacattttaaatttttaagaaggcaattaagaaagagaaggattagagatattggaggattagacatt |
220 |
Q |
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| T |
22631452 |
tgtttaagtagatggctacaacagttgcaaccacattttaaatttctaaaaaggcaactaagaaagagaaggattagagatattggaggattagacatt |
22631550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 27366589 - 27366663
Alignment:
| Q |
50 |
gtgttctttttagttgatttttgttt-aaagtgacttgaacaaagtgtggttggctattaataaatagatgattg |
123 |
Q |
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| T |
27366589 |
gtgttctttttagttgatttttgtttaaaagtgacttgaacaaagtgtggctggccatttataaatggattattg |
27366663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 27456936 - 27457010
Alignment:
| Q |
50 |
gtgttctttttagttgatttttgttt-aaagtgacttgaacaaagtgtggttggctattaataaatagatgattg |
123 |
Q |
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| T |
27456936 |
gtgttctttttagttgatttttgtttaaaagtgacttgaacaaagtgtggctggccatttataaatggattattg |
27457010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 45074454 - 45074379
Alignment:
| Q |
51 |
tgttctttttagttgatttttgtttaaa-gtgacttgaacaaagtgtggttggctattaataaatagatgattgtt |
125 |
Q |
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| T |
45074454 |
tgttctttttagttgatttttatttaaaagtgacttgaacaaagtgtggctggccatttataaatggattattgtt |
45074379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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