View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16434_low_18 (Length: 206)
Name: NF16434_low_18
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16434_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 4e-80; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 39469924 - 39470098
Alignment:
| Q |
22 |
tctgtgtctgtggagcccatccaataacccttccaatctctgctgtcctatctaagaatcgttctggtaaaaccgaactcaaatcagaaagagggcaatc |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
39469924 |
tctgtgtctgtggagcccatccaataacccttccaatctcttctgtcctatctaagaatccttctggtaaaaccgaactcaaatcagaaagagggtaatc |
39470023 |
T |
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| Q |
122 |
agatggcgcaaccatggtgcccttaggtggtggtttacgtagagagcacacaaaacggaccccagtattatctac |
196 |
Q |
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| T |
39470024 |
agatggcgcaaccatggtgcccttaggtggtggtttacgtagagaccacacaatacggaccccagtattctctac |
39470098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 39457455 - 39457633
Alignment:
| Q |
18 |
agtatctgtgtctgtggagcccatccaataacccttccaatctctgctgtcctatctaagaatcgttctggtaaaaccgaactcaaatcagaaagagggc |
117 |
Q |
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| T |
39457455 |
agtatgtgcgtctgtggggcccatccaataacccttccaatctctgctgtcctatctaagaatccttctggtaaaaccgaactcaaatcagaaagagtgt |
39457554 |
T |
|
| Q |
118 |
aatcagatggcgcaaccatggtgcccttaggtggtggtttacgtagagagcacacaaaacggaccccagtattatctac |
196 |
Q |
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| T |
39457555 |
aatcagatggcgcattcatggtgtccttcggtggtggtttacgtagagaccacacaaatcggaccccagtattctctac |
39457633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 39463728 - 39463874
Alignment:
| Q |
29 |
ctgtggagcccatccaataacccttccaatctctgctgtcctatctaagaatcgttctggtaaaaccgaactcaaatcagaaagagggcaatcagatggc |
128 |
Q |
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|||||||||||| ||||| ||||||||||||||| | |||| || |||||||| ||| |||||||| |||| ||||||||||||||| ||||||||||| |
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| T |
39463728 |
ctgtggagcccaaccaatcacccttccaatctctacagtccgatataagaatccttcgggtaaaacggaacctaaatcagaaagagggtaatcagatggc |
39463827 |
T |
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| Q |
129 |
gcaaccatggtgcccttaggtggtggtttacgtagagagcacacaaa |
175 |
Q |
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|||| ||||| |||||| ||||| |||||||||||||| || ||||| |
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| T |
39463828 |
gcaatcatggcgccctttggtgggggtttacgtagagaccaaacaaa |
39463874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 39452001 - 39451865
Alignment:
| Q |
30 |
tgtggagcccatccaataacccttccaatctctgctgtcctatctaagaatcgttctggtaaaaccgaactcaaatcagaaagagggcaatcagatggcg |
129 |
Q |
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||||| ||||| ||||| ||||||||||||||| | || | ||||||||||| ||||||||||||||||| || ||||||||||| | ||||||| || | |
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| T |
39452001 |
tgtggggcccaaccaatcacccttccaatctcttccgttcgatctaagaatccttctggtaaaaccgaacacagatcagaaagagtgtaatcagaaggtg |
39451902 |
T |
|
| Q |
130 |
caaccatggtgcccttaggtggtggtttacgtagaga |
166 |
Q |
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| T |
39451901 |
cagccatggcgccctttggtgctggtttacggagaga |
39451865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 39487460 - 39487317
Alignment:
| Q |
36 |
gcccatccaataacccttccaatctctgctgtcctatctaagaatcgttctggtaaaaccgaactcaaatcagaaagagggcaatcagatggcgcaacca |
135 |
Q |
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||||||||||| |||||||||||| ||| ||| | ||||||||||| ||| ||||||||||| |||||||||||||||| ||||||| || | ||||| |
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| T |
39487460 |
gcccatccaattacccttccaatccctgttgttcgatctaagaatccttcaggtaaaaccgattccaaatcagaaagagggtaatcagagggtgaaacca |
39487361 |
T |
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| Q |
136 |
tggtgcccttaggtggtggtttacgtagagagcacacaaaacgg |
179 |
Q |
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|| | ||||| |||| |||||||| ||||| |||||||||||| |
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| T |
39487360 |
tgattcccttcggtgagggtttacgcagagaccacacaaaacgg |
39487317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 39473031 - 39472895
Alignment:
| Q |
30 |
tgtggagcccatccaataacccttccaatctctgctgtcctatctaagaatcgttctggtaaaaccgaactcaaatcagaaagagggcaatcagatggcg |
129 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| ||||| |||| ||| |||||| |||| ||||||| |||||||| ||||||| |||| |
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| T |
39473031 |
tgtggggcccatccaacaacccttccaatctctgctgtccgctctaaaaatccttcgggtaaacttgaacccaaatcaaaaagagggtaatcagagggcg |
39472932 |
T |
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| Q |
130 |
caaccatggtgcccttaggtggtggtttacgtagaga |
166 |
Q |
| |
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|||||||||||| ||||| |||||||| ||||| |
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| T |
39472931 |
aggccatggtgccctccggtggaggtttacgaagaga |
39472895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 39455629 - 39455535
Alignment:
| Q |
30 |
tgtggagcccatccaataacccttccaatctctgctgtcctatctaagaatcgttctggtaaaaccgaactcaaatcagaaagagggcaatcaga |
124 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| || | ||||||||||| ||| ||||||| ||||| |||||||||||||| | ||||||| |
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| T |
39455629 |
tgtggagcccaaccaatcacccttccaatctctgccgtacgatctaagaatccttcgggtaaaatcgaacacaaatcagaaagagtgtaatcaga |
39455535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 39461257 - 39461146
Alignment:
| Q |
27 |
gtctgtggagcccatccaataacccttccaatctctgctgtcctatctaagaatcgttctggtaaaaccgaactcaaatcagaaagagggcaatcagatg |
126 |
Q |
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||||| |||||||||||||| |||||||||||| ||||||||| ||||||||| | ||| ||||||||| | | ||| |||| ||||| | ||||||| | |
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| T |
39461257 |
gtctgcggagcccatccaatgacccttccaatccctgctgtccgatctaagaacccttcgggtaaaaccaagcccaattcagtaagagagtaatcagagg |
39461158 |
T |
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| Q |
127 |
gcgcaaccatgg |
138 |
Q |
| |
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| T |
39461157 |
gtgcaaccatgg |
39461146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 39476507 - 39476371
Alignment:
| Q |
36 |
gcccatccaataacccttccaatctctgctgtcctatctaagaatcgttctggtaaaaccgaactcaaatcagaaagagggcaatcagatggcgcaacca |
135 |
Q |
| |
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|||||||||| | |||||||||||| || || ||||||||||||| ||| ||||||||| || ||||||| |||||||| |||| || || ||| ||| |
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| T |
39476507 |
gcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaatcataaagagggtaatccgagggtgcagcca |
39476408 |
T |
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| Q |
136 |
tggtgcccttaggtggtggtttacgtagagagcacac |
172 |
Q |
| |
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| T |
39476407 |
tagtgccctttgctggaggtttacgcagagaccacac |
39476371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 39484258 - 39484149
Alignment:
| Q |
36 |
gcccatccaataacccttccaatctctgctgtcctatctaagaatcgttctggtaaaaccgaactcaaatcagaaagagggcaatcagatggcgcaacca |
135 |
Q |
| |
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||||||| ||| | |||||||||||| || || | ||||||||||| ||| |||||||||| || ||||||| |||||| | ||||||| || ||| ||| |
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| T |
39484258 |
gcccatctaattatccttccaatctcggcagttcgatctaagaatccttcaggtaaaaccggacccaaatcataaagagagtaatcagagggtgcagcca |
39484159 |
T |
|
| Q |
136 |
tggtgccctt |
145 |
Q |
| |
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|||||||||| |
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| T |
39484158 |
tggtgccctt |
39484149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 43311705 - 43311843
Alignment:
| Q |
33 |
ggagcccatccaataacccttccaatctctgctgtcctatctaagaatcgttctggtaaaaccgaactcaaatcagaaagagggcaatcagatggcgcaa |
132 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||| | ||||||||| | ||| |||||||| | |||||||||||||| | ||||||||| | || |
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| T |
43311705 |
ggagcccatccaatgacccttccagtcctagctgttcgatctaagaacccttcaggtaaaactgcgaccaaatcagaaagagagtaatcagatgtctcac |
43311804 |
T |
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| Q |
133 |
ccatggtgcccttaggtggtggtttacgtagagagcaca |
171 |
Q |
| |
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||||||| ||||| ||||| ||||| || ||||| |||| |
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| T |
43311805 |
ccatggttcccttcggtgggggttttcgcagagaccaca |
43311843 |
T |
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