View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16434_low_3 (Length: 529)

Name: NF16434_low_3
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16434_low_3
NF16434_low_3
[»] chr7 (13 HSPs)
chr7 (1-522)||(16967783-16968293)
chr7 (201-522)||(16976885-16977209)
chr7 (234-519)||(10602456-10602742)
chr7 (231-424)||(16967302-16967496)
chr7 (231-424)||(16976108-16976302)
chr7 (6-134)||(16976663-16976792)
chr7 (231-438)||(16823113-16823315)
chr7 (237-375)||(17007644-17007782)
chr7 (255-424)||(16991470-16991637)
chr7 (2-70)||(16991919-16991987)
chr7 (2-75)||(16823571-16823644)
chr7 (14-70)||(16968285-16968341)
chr7 (45-134)||(17007459-17007549)
[»] chr4 (2 HSPs)
chr4 (231-424)||(35263741-35263935)
chr4 (2-70)||(35263391-35263459)


Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 16967783 - 16968293
Alignment:
Q  1 ctttatctgattccttcatctcttcttgcttcgtttgaaccgatgaaactcctccaacacctaaacctttgacataannnnnnnncctttattatagtca 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||| || |  ||     
T  16967783 ctttatttgattccttcatctcttcttgcttcgtttgaaccgatgaaactccaccaacacctaaacctttgacataat---------ttttttttcctc- 16967872  T
Q  101 gcaacattcacactgtccttaggtttggcattgtctttacctttgacataatttgnnnnnnnnccctctgatgtttcattctggtatgnnnnnnnnnnnn 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||                
T  16967873 -caacattcacactgtccttaggtttggcattgtctttacctttgacataatttgttttttttccctctgatgtttcattctggtatgaaaaaaaaagaa 16967971  T
Q  201 ccaaagtttaaacatataaataatttaagtttaagcaccagtcctatagttcacaattaaaattaatatgcaaagttcaaatttaaatattcctaaagag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16967972 ccaaagtttaaacatataaataatttaagtttaagcaccagtcctatagttcacaattaaaattaatatgcaaagttcaaatttaaatgttcctaaagag 16968071  T
Q  301 aaggagtaccttggatacaacttttgattctctaatggttgtctccaattcatcctgtaacacatcattctcttcatcctccttggtcttttgcactttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16968072 aaggagtaccttggatacaacttttgattctctaatggttgtctccaattcatcctgtaacacatcattctcttcatcctcgttggtcttttgcactttt 16968171  T
Q  401 cccacctttttaaagctccatatcgatgggggtgtctccaaaggaaccagtggtggctgcctatctcgtcgatcaacagcatcatacttgaactccaaca 500  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16968172 cccacctttttaaagctccatatcgatgggggtgtctccacaggaaccagtggtggctgcctatctcgtcgatcaacagcatcatacttgaactccaaca 16968271  T
Q  501 caattgattcattcttcatctc 522  Q
    ||||||||||||||||||||||    
T  16968272 caattgattcattcttcatctc 16968293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 201 - 522
Target Start/End: Original strand, 16976885 - 16977209
Alignment:
Q  201 ccaaagtttaaacatataaataatttaagtttaagcaccagtcctatagttcac-aattaaaattaata-----tgcaaagttcaaatttaaatattcct 294  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||     |||||||||||||||||||| |||||    
T  16976885 ccaaagtttaaacatataaataatttaagtt---gcaccagtcctatagttcacgaattaaaattaataacaaatgcaaagttcaaatttaaatgttcct 16976981  T
Q  295 aaagagaaggagtaccttggatacaacttttgattctctaatggttgtctccaattcatcctgtaacacatcattctcttcatcctccttggtcttttgc 394  Q
    ||||||||||| ||||||| ||||| ||||||||||||| | ||   |||||| |||||||  |||||| || | ||| |||||||||||||||||| ||    
T  16976982 aaagagaaggattaccttgtatacagcttttgattctcttagggccatctccatttcatcccataacacttcctcctcctcatcctccttggtctttggc 16977081  T
Q  395 acttttcccacctttttaaagctccatatcgatgggggtgtctccaaaggaaccagtggtggctgcctatctcgtcgatcaacagcatcatacttgaact 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||||||||||||||||||||  || |||||||||||||    
T  16977082 acttttcccacctttttaaagctccatatcgatgggggtgtctccacaataaccggtggtggctgcctatctcgtcgatcaaaggcgtcatacttgaact 16977181  T
Q  495 ccaacacaattgattcattcttcatctc 522  Q
    | ||||||| ||||||||||||||||||    
T  16977182 cgaacacaactgattcattcttcatctc 16977209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 234 - 519
Target Start/End: Complemental strand, 10602742 - 10602456
Alignment:
Q  234 agcaccagtcctatagttcacaattaaaattaata-tgcaaagttcaaatttaaatattcctaaagagaaggagtaccttggatacaacttttgattctc 332  Q
    ||||| ||||||||||||||||| ||||| ||| | |||| ||||||||||||||| ||| ||||| | |||| |||| |||||||| | |  |||||||    
T  10602742 agcactagtcctatagttcacaaataaaaataaaaatgcagagttcaaatttaaatgttcttaaagtggaggattaccatggatacagcgtcagattctc 10602643  T
Q  333 taatggttgtctccaattcatcctgtaacacatcattctcttcatcctccttggtcttttgcacttttcccacctttttaaagctccatatcgatggggg 432  Q
    |||    ||| || |||||||||  |||||| || ||||| || |||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  10602642 taagaactgtatctaattcatcccataacacttcgttctcctcctcctccatggtcttttgcactttttccaccttcttaaggctccatatcgatggggg 10602543  T
Q  433 tgtctccaaaggaaccagtggtggctgcctatctcgtcgatcaacagcatcatacttgaactccaacacaattgattcattcttcat 519  Q
    |||||||| || |||| || |||||||  ||||| ||||||||||  |||| | ||  ||||| |||| | |||| |||||||||||    
T  10602542 tgtctccacagaaaccggttgtggctgtgtatcttgtcgatcaacgccatcctcctcaaactcgaacaaagttgaatcattcttcat 10602456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 231 - 424
Target Start/End: Original strand, 16967302 - 16967496
Alignment:
Q  231 ttaagcaccagtcctatagttcacaa-ttaaaattaatatgcaaagttcaaatttaaatattcctaaagagaaggagtaccttggatacaacttttgatt 329  Q
    |||||||| ||||||||||||||||| |||| ||||| | ||||||||||||||| ||| ||| ||||||| | || ||||||| ||||| ||| | |||    
T  16967302 ttaagcactagtcctatagttcacaaattaacattaaaacgcaaagttcaaattttaatgttcttaaagaggatgattaccttgcatacagcttctaatt 16967401  T
Q  330 ctctaatggttgtctccaattcatcctgtaacacatcattctcttcatcctccttggtcttttgcacttttcccacctttttaaagctccatatc 424  Q
    |||||| ||| || ||||||||||||  |||||| ||||||||||| |||||||| ||||| || |||||| |||||||||| | ||||||||||    
T  16967402 ctctaagggtcgtttccaattcatcccataacacttcattctcttcctcctccttagtcttctgaactttttccacctttttgaggctccatatc 16967496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 231 - 424
Target Start/End: Original strand, 16976108 - 16976302
Alignment:
Q  231 ttaagcaccagtcctatagttcacaa-ttaaaattaatatgcaaagttcaaatttaaatattcctaaagagaaggagtaccttggatacaacttttgatt 329  Q
    |||||||| ||||||||||||||||| |||| ||||| | ||||||||||||||| ||| ||| ||||||| | || ||||||||||||| ||| |||||    
T  16976108 ttaagcactagtcctatagttcacaaattaacattaaaacgcaaagttcaaattttaatgttcttaaagaggatgattaccttggatacagcttctgatt 16976207  T
Q  330 ctctaatggttgtctccaattcatcctgtaacacatcattctcttcatcctccttggtcttttgcacttttcccacctttttaaagctccatatc 424  Q
    |||||| || ||| ||||||||||||  || ||| ||||||||||| |||||||| |||||||  |||||| || ||||||| | ||||||||||    
T  16976208 ctctaagggctgtttccaattcatcccatatcacttcattctcttcctcctccttagtcttttcaactttttccgcctttttgaggctccatatc 16976302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 16976663 - 16976792
Alignment:
Q  6 tctgattccttcatctcttcttgcttcgtttgaaccgatgaaactcctccaacacctaaacctttgacata-annnnnnnncctttattatagtcagcaa 104  Q
    |||||||||||||||| ||||||||| |||||  ||||| |||||||||||||||||||||||  ||||||          || |||| | |||||||||    
T  16976663 tctgattccttcatcttttcttgctttgtttgggccgataaaactcctccaacacctaaacctgcgacatattttttctttcccttatcaaagtcagcaa 16976762  T
Q  105 cattcacactgtccttaggtttggcattgt 134  Q
    ||||||||||||| ||||||||||||||||    
T  16976763 cattcacactgtcgttaggtttggcattgt 16976792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 438
Target Start/End: Original strand, 16823113 - 16823315
Alignment:
Q  231 ttaagcaccagtcctatagttcacaattaaaattaatatgcaaagttcaaatttaaatattcctaaagagaaggagtaccttggatacaacttttgattc 330  Q
    |||||||| |||||||||||||||||     ||||| ||| || |||||||||||||| ||| ||||||| |||| |||| ||||| || ||| ||||||    
T  16823113 ttaagcactagtcctatagttcacaa-----attaaaatggaatgttcaaatttaaatgttcttaaagagcaggattaccatggattcagcttctgattc 16823207  T
Q  331 tctaatggttgtctccaattcatcctgtaacacatcattctcttcatcctccttggtcttttgcacttttcccacctttttaaagctccatatcgatggg 430  Q
    ||||| || ||| |||| || ||||  ||||   || | |||    ||||| |||||||||||||||| | |||||||||||| ||||||||||  |||     
T  16823208 tctaagggctgtatccatttgatcccataacggttcctgctccaactcctctttggtcttttgcacttcttccacctttttaaggctccatatctgtgga 16823307  T
Q  431 ggtgtctc 438  Q
    ||||||||    
T  16823308 ggtgtctc 16823315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 375
Target Start/End: Original strand, 17007644 - 17007782
Alignment:
Q  237 accagtcctatagttcacaa-ttaaaattaatatgcaaagttcaaatttaaatattcctaaagagaaggagtaccttggatacaacttttgattctctaa 335  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||| || |||| | | ||||||| |||  |||||| ||||| |||| |||||||||||    
T  17007644 accagccctatagttcacaaattaaaatgaatatgaaaagttcaactt-aaatgtgcttaaagaggaggtttaccttagataccacttctgattctctaa 17007742  T
Q  336 tggttgtctccaattcatcctgtaacacatcattctcttc 375  Q
     || ||  ||||||||||||  || ||| |||||||||||    
T  17007743 gggctgcatccaattcatcccatagcacttcattctcttc 17007782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 424
Target Start/End: Original strand, 16991470 - 16991637
Alignment:
Q  255 aattaaaattaatatgcaaagttcaaatttaaatattcctaaagagaaggagtaccttggatacaacttttgattctctaatggttgtctccaattcatc 354  Q
    |||||||| ||| | |||||| |||||||||||| ||| ||  ||| |||| |||| ||||| || | || ||||||||| ||| ||| || ||||||||    
T  16991470 aattaaaactaaaaagcaaagatcaaatttaaatgttctta--gaggaggattaccatggattcagcgttagattctctactggctgtatcaaattcatc 16991567  T
Q  355 ctgtaacacatcattctcttcatcctccttggtcttttgcacttttcccacctttttaaagctccatatc 424  Q
    |  |||||  || | ||| || ||||||||||||||||||||  |  |||||||||||| ||||||||||    
T  16991568 ccataacagttcctcctcctcttcctccttggtcttttgcacgatgtccacctttttaaggctccatatc 16991637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 16991919 - 16991987
Alignment:
Q  2 tttatctgattccttcatctcttcttgcttcgtttgaaccgatgaaactcctccaacacctaaaccttt 70  Q
    |||||||||||||||||||| |||||||||  ||||||  || ||||||||||||||| |||| |||||    
T  16991919 tttatctgattccttcatcttttcttgctttatttgaaatgaagaaactcctccaacatctaagccttt 16991987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 16823571 - 16823644
Alignment:
Q  2 tttatctgattccttcatctcttcttgcttcgtttgaaccgatgaaactcctccaacacctaaacctttgacat 75  Q
    ||||||||| ||| |||||| |||||| || | ||||   || |||||||||||||||||||||||||||||||    
T  16823571 tttatctgaatccctcatcttttcttgttttgcttgaggggaagaaactcctccaacacctaaacctttgacat 16823644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 16968285 - 16968341
Alignment:
Q  14 cttcatctcttcttgcttcgtttgaaccgatgaaactcctccaacacctaaaccttt 70  Q
    ||||||||||||||||||  ||||||| ||||||| |||||||||| |||| |||||    
T  16968285 cttcatctcttcttgctttttttgaactgatgaaattcctccaacatctaagccttt 16968341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 17007459 - 17007549
Alignment:
Q  45 gaaactcctccaacacctaaacctttgacataa-nnnnnnnncctttattatagtcagcaacattcacactgtccttaggtttggcattgt 134  Q
    ||||||||||||||| |||||||||||||||||         ||||||| | |||| |||||||| |||||||  ||||||||||||||||    
T  17007459 gaaactcctccaacatctaaacctttgacataatgttcttttcctttatcacagtcggcaacattgacactgttattaggtttggcattgt 17007549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 231 - 424
Target Start/End: Complemental strand, 35263935 - 35263741
Alignment:
Q  231 ttaagcaccagtcctatagttcacaa-ttaaaattaatatgcaaagttcaaatttaaatattcctaaagagaaggagtaccttggatacaacttttgatt 329  Q
    |||||||| ||||||||||||||||| |||||||| | | |||||||||||||||| || ||| || |||| |||| |||| ||||| || | |  ||||    
T  35263935 ttaagcactagtcctatagttcacaaattaaaatttaaaagcaaagttcaaatttatatgttcttatagaggaggattaccatggattcagcgtcagatt 35263836  T
Q  330 ctctaatggttgtctccaattcatcctgtaacacatcattctcttcatcctccttggtcttttgcacttttcccacctttttaaagctccatatc 424  Q
    |||||  || ||| || |||||||||  |||||| || | ||| || ||||||||||||||||  |||||| |||||||||||| ||||||||||    
T  35263835 ctctacgggctgtatcaaattcatcccataacacttcctcctcctcttcctccttggtcttttctactttttccacctttttaaggctccatatc 35263741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 35263459 - 35263391
Alignment:
Q  2 tttatctgattccttcatctcttcttgcttcgtttgaaccgatgaaactcctccaacacctaaaccttt 70  Q
    |||||||||||| ||||||| |||||||||  | ||||| || ||||||||||||||| |||| |||||    
T  35263459 tttatctgattcattcatcttttcttgctttctatgaactgaagaaactcctccaacatctaagccttt 35263391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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