View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16434_low_5 (Length: 451)
Name: NF16434_low_5
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16434_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 155 - 445
Target Start/End: Original strand, 36527507 - 36527787
Alignment:
| Q |
155 |
tctaagaaatattgtatgtaatttactatggtnnnnnnn-tcaacatgtgcttacacactaatttgatgattaagaaatagacattgagaagagtcatac |
253 |
Q |
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| T |
36527507 |
tctaagaaaaattgtatgtaatttactatggtaaaaaaaatcaacatgtgcttacatactgatttgatgattaagaaatagacattgagaacagtcatac |
36527606 |
T |
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| Q |
254 |
ataaatgtatagaaaattgcacacaaatgaaagacaaaccgtcaacaagctgcaccattaacnnnnnnncatttgctaaaaacaggggattaaactaaac |
353 |
Q |
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| T |
36527607 |
ataaatgtatagaaaattgcacacaaatgaaagacaaac-----------tgcgccagtaactctttttcatttgctaaaaactggggattaaactaaac |
36527695 |
T |
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| Q |
354 |
aatatcttttacactatttgatttaaaatttggtcacgggactgtacaaaacaggtaataaggaattggacctatacaataattcttctctc |
445 |
Q |
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| T |
36527696 |
aattttttttacactatttgatttaaaatttggtcacgggactgcacaaaacaggtaacaaggaattggacctctacaataattcttctctc |
36527787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 36526639 - 36526785
Alignment:
| Q |
16 |
aattgtatcgagttaatcacatttggattctttgaatcatgtattagattagatgtga---------tctcaaaaaagatttaacaagtgagggacatat |
106 |
Q |
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| T |
36526639 |
aattgtatcgagttaatctcatttggattctttgaatcatgtattagatgagatgtgaatcatgtgatctcaaaaaagatttaacaagt--------tat |
36526730 |
T |
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| Q |
107 |
ctcacttataaaccatttttgtaaagttaacttcaacttaacttaaattctaaga |
161 |
Q |
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| T |
36526731 |
ctcacttataaaccatttttgtaaagttaacttcaacttaacttaaattctaaga |
36526785 |
T |
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