View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16434_low_6 (Length: 404)
Name: NF16434_low_6
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16434_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 47590477 - 47590856
Alignment:
| Q |
15 |
tcacttctttgtcttccaatgccatcaga-ccagtttcttaaagacgacagtcgacattgccaatggtctctttatgagccgtggtgatatctccatctc |
113 |
Q |
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| T |
47590477 |
tcacttctttgtcttccaatgccatcagaaccagtttcttaaagacgacagtcgacactgccaatggtctctttatgtgccgtggtgatatctccatctc |
47590576 |
T |
|
| Q |
114 |
ccctaccctctgtcagctatgtatccaacatgcaacaaaaagaatattatcggagtgcccttcctccaaagaggctataatttggtacgataaatgttta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47590577 |
ccctaccctctgtcagctatgtatccaacatgcaacaaaaagaatattatcggagtgcccttcctccaaagaggctataatttggtacgataaatgttta |
47590676 |
T |
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| Q |
214 |
ctccgatattcctatcattctctcctttcacgtattgatacaagtgctccaaaatttcaccaattcaatttggccaatagttctaacctcaacctgctgc |
313 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47590677 |
ctccgctattcctatcattctctcctttcacgtattgatacaagtgctccaaaatttcaccaattcaatttggccaatagttctaacctcaacctgctgc |
47590776 |
T |
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| Q |
314 |
atagattcacaacttggaaactggcagatatcttacatgaagtggggaatttacagacaggggatagaaccattaagaat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47590777 |
atagattcacaacttggaaactggcagatatcttacatgaagtggggaatttacagacaggggatagaaccattaagaat |
47590856 |
T |
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