View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16434_low_9 (Length: 373)
Name: NF16434_low_9
Description: NF16434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16434_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 7267951 - 7267608
Alignment:
| Q |
16 |
aatatacccataaaaagtaataaattttcaattgtattcaaaatccagtcgcaaatctagaatgtgtcgttctctccttctctcgaaaccaaaagcattc |
115 |
Q |
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| T |
7267951 |
aatatacccataaaaagtaataaattttcaatggtattcaaaatccaatcgcaaatctagaatgtgtcgttctctccatctctagaaaccaaaagcattc |
7267852 |
T |
|
| Q |
116 |
atctccattagattcaaacacttgtcttcactatcgttcaaccccttaagtgttcatctccatttatgcaatatttcaaggacgcggtgtatcaagtttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7267851 |
atctccattagattcaaacacttgtcttcactatcgttcaaccccttaagtgttcatctccatttatgcaatatttcaagaacgcggtgtatcaagtttt |
7267752 |
T |
|
| Q |
216 |
aagcacttcactttacattagcccatgtaaactcgatttacatagcctacgtaaactcgatttacgtaaattatgtgaactcagtttacatat----caa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7267751 |
aagcacttcactttacattagcccatgtaaactcgatttacatagcctacgtaaactcgatttacgtaaattatgtgaactcagtttacatatatatcaa |
7267652 |
T |
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| Q |
312 |
gttgtcttaatttacttagagttgtaatttgcaaactcagtttat |
356 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7267651 |
gta-tcttaatttacttagagttgtaatttgcaaactcagtttat |
7267608 |
T |
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