View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16435_high_14 (Length: 381)
Name: NF16435_high_14
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 6088552 - 6088187
Alignment:
| Q |
1 |
acacaatataagtggtcggcaatggttacacattcaattccaaaaactatagcactctcataatgttaggtctagttaggttctcaattattgtataaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6088552 |
acacaatataagtggtcggcaatggttacacattcaattccaaaaactatagcactctcataatgttaggtctagttaggttctcaattattgtataaaa |
6088453 |
T |
|
| Q |
101 |
ctgtatgtcagtaagttaaaacctctgagaattgcttgagaaaatgacaaactctctaaaacaggtaaaagacaacctaagaattaataaaggggccaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
6088452 |
ctgtatgtcagtaagttaaaacctctgagaattgcttgagaaaatgacaaactctctaaaacaggtaaaagacaacatacgaattaataaaggggccaca |
6088353 |
T |
|
| Q |
201 |
aatctcttttatgtgtggattagtagaatttggagccactaattatactcttcattagtacctataacttgtggaaatctatggtttagctagatttttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6088352 |
aatctcttttatgtgtggattagtagaatttggagccactaattatactcttcattagtacctataacttgtggaaatctatggtttagctagatttttt |
6088253 |
T |
|
| Q |
301 |
agggctagttattgatttgcaatctcttgttttgctaaataagataacttagtggatatcattttg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6088252 |
agggctagttattgatttgcaatctcttgttttgctaaataagataacttagtggatatcattttg |
6088187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 76 - 366
Target Start/End: Original strand, 31715572 - 31715861
Alignment:
| Q |
76 |
ttaggttctcaattattgtataaaactgtatgtcagtaagttaaaacctctgagaattgcttgagaaaatgacaaactctctaaaacaggtaaaagacaa |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
31715572 |
ttaggttctcaattattgtataaaactgtatgtcagtaagataaaaaacctcagagttgcttgacaaaatgacaaactctctaaaacaggtaaaagacca |
31715671 |
T |
|
| Q |
176 |
cctaagaattaataaaggggccacaaatctcttttatgtgtggattagtagaatttggagccactaattatactcttcattagtacctataacttgtgga |
275 |
Q |
| |
|
| | ||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31715672 |
caaacaaattaataaagggaccacaaatct-ttttatgtgtggattagcagaatttggagccactaattatactcttcattagtaccaataacttgtgga |
31715770 |
T |
|
| Q |
276 |
aatctatggtttagctagattttttagggctagttattgatttgcaatctcttgttttgctaaataagataacttagtggatatcattttg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31715771 |
aatctatggtttagctagattttttagggctagttattgatttgcaatctcttgttttgctaaataagataacttggtggatatcattttg |
31715861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University