View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_high_17 (Length: 330)
Name: NF16435_high_17
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 9811214 - 9810920
Alignment:
| Q |
1 |
ccagggaactgttctccaacctggctggcttccaggttactctcctctgatggaataaaaattaaggaacaagacaacaaattaaggttaaacacctgaa |
100 |
Q |
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| T |
9811214 |
ccagggaactgttctccaacctggctggcaaccaggtcactctcctctaatggagtaaaaattaaggaacaagacaacaaattaaggttaaacacctgaa |
9811115 |
T |
|
| Q |
101 |
aaaatttagtaatgacatgccagctttgtctcttgtttgtgcaagattcagtttttcttcataaagctttaacagataaggtgactcttcttaaaacaat |
200 |
Q |
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| T |
9811114 |
aaaatttagtaatgacatgccagctttgtctcttgtttgtgcaagattcagtttttcttcataaagctttaacagataaggtgactcttcttaaaacaat |
9811015 |
T |
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| Q |
201 |
ttatatgtgtcaatgaacaatttatcactcattaaaaaaggagcagtcaagcttgcattct-ttttcgcaaacctttcttaagaagatatcgcac |
294 |
Q |
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| T |
9811014 |
ttatatgtgtcaatgaacaatttatcgctcattaaaaaaggagcagtcaagcttgcattcttttttcgcaaacctttcttaagaagatattgcac |
9810920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 306
Target Start/End: Complemental strand, 9809696 - 9809500
Alignment:
| Q |
112 |
atgacatgccagctttgtctcttgtttgtgcaagattcagtttttcttcataaagctttaacagataaggtgactcttc-ttaaaacaatttatatgtgt |
210 |
Q |
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| T |
9809696 |
atgacatgccaatttagtccctggtgtgtgcaagattcagcttttcttcaga--ggtttaagagataagatgactcctccttaaaacgtattatgtgtgt |
9809599 |
T |
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| Q |
211 |
--caatgaacaatttatcactcattaaaaaaggagcagtcaagcttgcattctttttc-gcaaacctttcttaagaagatatcgcacaattgaggccct |
306 |
Q |
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| T |
9809598 |
gtcaaggaacaacttaccggtcactacaaatggagttgttaaacttgcattctttttccgcaaacctttctttagaagatattgcacaactgatgccct |
9809500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 63 - 322
Target Start/End: Original strand, 14157978 - 14158238
Alignment:
| Q |
63 |
taaggaacaagacaacaaattaaggttaaacacctgaaaaaatttagtaatgacatgccagctttgtctcttgtttgtgcaagattcagtttttcttcat |
162 |
Q |
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| T |
14157978 |
taaggaacaagataacaaattaaggttaaacacctgaaaa--tttggtaaagacatgccagctttgtctcttgtttatgcaagattcagtttttcttcat |
14158075 |
T |
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| Q |
163 |
aaagctttaacagataaggtgactcttcttaaaacaatt--tatatgtgtcaatgaacaatttatcactcattaaaaaaggagcagtcaagcttgcattc |
260 |
Q |
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| T |
14158076 |
aaagctttaacagataaggtaactcctccttaaacgatttatatatgtgtcaaggaacaacttatcactcattaaaaatggagcagttaagcttgcattc |
14158175 |
T |
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| Q |
261 |
-tttttcgcaaacctttcttaagaagatatcgcacaattgaggcccttgatatgattcttctc |
322 |
Q |
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| T |
14158176 |
ttttttcgcaaacctttcttcagaagatattgcaaaactaatgtccttggtatgatacttctc |
14158238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 315
Target Start/End: Original strand, 14161481 - 14161688
Alignment:
| Q |
112 |
atgacatgccagctttgtctcttgtttgtgcaagattcagtttttcttcataaagctttaacagataaggtgact-cttcttaaaac--aatttatatgt |
208 |
Q |
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| T |
14161481 |
atgacatgccaattttgtccctggtgtgtgcaagattcagcttttcttcatagagctttaagagataagatgactcctccttaaaacgtattatgtatgt |
14161580 |
T |
|
| Q |
209 |
gtcaatgaacaatttatcactcattaaaaaaggagcagtcaagcttgcattcttttt-cgcaaacctttcttaagaagatatcgcacaattgaggccctt |
307 |
Q |
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| T |
14161581 |
gttaaggaacgacttatcagtcattacaaatggagtagttaagcttgcattctttttccgcaaacctttctttagaagatattgcacaactgaggcccta |
14161680 |
T |
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| Q |
308 |
gatatgat |
315 |
Q |
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| T |
14161681 |
ggtatgat |
14161688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 14475513 - 14475554
Alignment:
| Q |
249 |
aagcttgcattctttt-tcgcaaacctttcttaagaagatat |
289 |
Q |
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| T |
14475513 |
aagcttgcattcttttttcgcaaacctttcttcagaagatat |
14475554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 14486029 - 14485957
Alignment:
| Q |
135 |
gtttgtgcaagattcagtttttcttcataaagctttaacagataaggtgact-cttcttaaaacaatttatat |
206 |
Q |
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| T |
14486029 |
gtttgtgcaagattcaaattttcttcgtaaagctttaataggtaagaagactcctccttaaaacgatttatat |
14485957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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