View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_high_21 (Length: 299)
Name: NF16435_high_21
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 3744850 - 3745132
Alignment:
| Q |
1 |
tcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744850 |
tcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgtt |
3744949 |
T |
|
| Q |
101 |
atcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatgaattctgatcttccttaatatctgcaggagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744950 |
atcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatgaattctgatcttccttaatatctgcaggagta |
3745049 |
T |
|
| Q |
201 |
gcagccattgccttggcatctctaacataggatctagttggagcattgtgtgatgatgtcttctccacattgtcatctgaaag |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3745050 |
gcagccattgccttggcatctctaacataggatctagttggagcattgtgtgatgatgtcttctccatattgtcatctgaaag |
3745132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 48303054 - 48303219
Alignment:
| Q |
1 |
tcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgtt |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||| |||||||| || |||||||||| |||||| || |
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| T |
48303054 |
tcctcataaacttaccaacccttctttccatcttcaaatattt---accaccttctttctcttcttctctcttcctttcaccgcttatcagaagcacatt |
48303150 |
T |
|
| Q |
101 |
atcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatga |
169 |
Q |
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|||||||| ||||||||||| || || ||||||||||| ||||||||||| | ||||||||||||||| |
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| T |
48303151 |
ctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatga |
48303219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 10462270 - 10462162
Alignment:
| Q |
61 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
160 |
Q |
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||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| |||||||||||||| |||| ||| ||| |||| |
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| T |
10462270 |
cttcttccctcttcctctcgccggttatcacaaccactttatcatcttcaacctcaaccttgatatcaccagatttcaatcccggcaagtccatctcgaa |
10462171 |
T |
|
| Q |
161 |
cacgtatga |
169 |
Q |
| |
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||| |||| |
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| T |
10462170 |
tacgaatga |
10462162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 10539854 - 10539977
Alignment:
| Q |
61 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
160 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| ||||||||| ||| |||| || || |||| |
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| T |
10539854 |
cttcttccctcttcctctcgccggttatcacaaccacattatcatcttcaacctcaaccttgatatcatcagatttcattcccagcatatctgtctcgaa |
10539953 |
T |
|
| Q |
161 |
cacgtatgaattctgatcttcctt |
184 |
Q |
| |
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|||||| || || |||| |||||| |
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| T |
10539954 |
cacgtacgagttttgatattcctt |
10539977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 10543464 - 10543543
Alignment:
| Q |
27 |
tccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatc |
106 |
Q |
| |
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||||||||||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || ||||| |
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| T |
10543464 |
tccattctcaaatacttaacaccttcttctacttcttcttccctcttcctttctccacttatcacaaccacattttcatc |
10543543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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