View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_high_23 (Length: 287)
Name: NF16435_high_23
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 20493776 - 20494039
Alignment:
| Q |
19 |
gttttgtgttactggatctcctacttgtttggatattggaagatttgataatgatgaagctggaagacgtttgaatttgactgaacatgaggtttatcaa |
118 |
Q |
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| T |
20493776 |
gttttgtgttactggatctcctacttgtttggatattggaagatttgataatgatgaagctggaagacgtttgaatttgactgaacatgaggtttatcaa |
20493875 |
T |
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| Q |
119 |
gttgtgtttgttgatgctgctacttatgaagctgagtatattaaatctgttgtttgaatttctatttagataactagattttgtaacttttgtttttatt |
218 |
Q |
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| T |
20493876 |
gttgtgtttgttgatgctgctacttatgaagctgagtatattaaatctgttgtttgaatttctatttagataactagcttatgtaacttttgtttttatt |
20493975 |
T |
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| Q |
219 |
gtgtagaactatgttcttgaacaatttaaacatttaataagtgaaataagttacctttgcttct |
282 |
Q |
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| T |
20493976 |
gtgtagaactatgttcttgaacaatttaaacatttaataagtgaaataagttacctttgcttct |
20494039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 20476069 - 20476103
Alignment:
| Q |
118 |
agttgtgtttgttgatgctgctacttatgaagctg |
152 |
Q |
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| T |
20476069 |
agttgtgtttgttgatgctgcttcttatgaagctg |
20476103 |
T |
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