View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16435_high_29 (Length: 249)

Name: NF16435_high_29
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16435_high_29
NF16435_high_29
[»] chr4 (8 HSPs)
chr4 (7-233)||(8966387-8966613)
chr4 (7-232)||(8979087-8979312)
chr4 (9-225)||(9000305-9000521)
chr4 (7-233)||(8900709-8900935)
chr4 (7-197)||(9030601-9030791)
chr4 (25-236)||(8914611-8914822)
chr4 (7-224)||(8954751-8954968)
chr4 (37-197)||(8929572-8929732)
[»] chr5 (2 HSPs)
chr5 (7-233)||(20074168-20074394)
chr5 (7-188)||(9400451-9400632)
[»] chr7 (2 HSPs)
chr7 (22-188)||(3619978-3620138)
chr7 (64-146)||(3630396-3630478)
[»] scaffold0287 (1 HSPs)
scaffold0287 (64-146)||(15607-15689)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 8966613 - 8966387
Alignment:
Q  7 gcaacagagaccacagcagccacatcagtttgggctataacctccctaataaaaaacccaagagtaatgaagaaagtacaagaagaaattaggaacttgg 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8966613 gcaacagacaccacagcagccacatcagtttgggctataacctccctgataaaaaacccaagagtaatgaagaaagtacaagaagaaattagaaacttgg 8966514  T
Q  107 gaagtaaaaaagaattcatagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagattgcacctacctaccccact 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8966513 gaagtaaaaaagaattcatagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagattgcacctacctaccccact 8966414  T
Q  207 acttgttccaagagaatcaagagaaaa 233  Q
    |||||||||||||||||||||||||||    
T  8966413 acttgttccaagagaatcaagagaaaa 8966387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 8979087 - 8979312
Alignment:
Q  7 gcaacagagaccacagcagccacatcagtttgggctataacctccctaataaaaaacccaagagtaatgaagaaagtacaagaagaaattaggaacttgg 106  Q
    |||||||| || ||| |||||||||||||||||||||| ||  |||||||||||||||||||||||||||  ||||| ||||| ||||||||||||||||    
T  8979087 gcaacagatactacatcagccacatcagtttgggctatgactgccctaataaaaaacccaagagtaatgagaaaagtgcaagaggaaattaggaacttgg 8979186  T
Q  107 gaagtaaaaaagaattcatagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagattgcacctacctaccccact 206  Q
    || |||||||||| ||  |||| ||| |||||||||||||||  | |||||| |||||||||||||||||||| || |||||| |||||||  | |||||    
T  8979187 gaggtaaaaaagattttttagatgaagatgatattcaaaattctctatatttgaaggcagtgataaaagagacattaagattgtacctaccagctccact 8979286  T
Q  207 acttgttccaagagaatcaagagaaa 232  Q
     ||||| |||||||||||||| ||||    
T  8979287 gcttgtaccaagagaatcaagggaaa 8979312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 9000521 - 9000305
Alignment:
Q  9 aacagagaccacagcagccacatcagtttgggctataacctccctaataaaaaacccaagagtaatgaagaaagtacaagaagaaattaggaacttggga 108  Q
    |||||| ||||||||||||||||||||||||||||| ||  || |||| ||||||||||||||||||| |||||||||||| |||||||| || ||||||    
T  9000521 aacagataccacagcagccacatcagtttgggctatgactgccttaatgaaaaacccaagagtaatgaggaaagtacaagatgaaattagaaatttggga 9000422  T
Q  109 agtaaaaaagaattcatagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagattgcacctacctaccccactac 208  Q
     || ||||||| ||  |||| ||| |||||||||||||||| || ||||| ||||||||||| ||||||||| | ||||||||||||||  |||| ||||    
T  9000421 ggtgaaaaagattttttagatgaagatgatattcaaaatttaccttatttgaaggcagtgattaaagagacgctaagattgcacctaccagcccctctac 9000322  T
Q  209 ttgttccaagagaatca 225  Q
    || | | ||||||||||    
T  9000321 ttatgcaaagagaatca 9000305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 8900935 - 8900709
Alignment:
Q  7 gcaacagagaccacagcagccacatcagtttgggctataacctccctaataaaaaacccaagagtaatgaagaaagtacaagaagaaattaggaacttgg 106  Q
    ||||| || |||||| | ||||||  |||||||||||| ||  || |||||||||| |||||||||||||||||||| ||| |||| |||||||| |       
T  8900935 gcaacggataccacatctgccacaatagtttgggctatgactgccttaataaaaaatccaagagtaatgaagaaagtgcaacaagagattaggaattcaa 8900836  T
Q  107 gaagtaaaaaagaattcatagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagattgcacctacctaccccact 206  Q
    ||  |||||||||||| ||||| ||| ||||||| ||||||||| | || || |||||||||||||||||||| ||||||||| |||||||   |||| |    
T  8900835 gagttaaaaaagaatttatagatgaagatgatatacaaaatttctcctacttgaaggcagtgataaaagagacattgagattgtacctaccaggcccatt 8900736  T
Q  207 acttgttccaagagaatcaagagaaaa 233  Q
     ||||| ||||||||| |||| |||||    
T  8900735 gcttgtgccaagagaaacaagggaaaa 8900709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 9030601 - 9030791
Alignment:
Q  7 gcaacagagaccacagcagccacatcagtttgggctataacctccctaataaaaaacccaagagtaatgaagaaagtacaagaagaaattaggaacttgg 106  Q
    |||||||| |||||| ||||| |||||||||||||||| ||| ||||||| ||||||||||||||| || | ||||||||||||||||| || |||||||    
T  9030601 gcaacagataccacatcagccgcatcagtttgggctatgaccgccctaatgaaaaacccaagagtattggataaagtacaagaagaaatcagaaacttgg 9030700  T
Q  107 gaagtaaaaaagaattcatagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagattgcacctacc 197  Q
    || ||  |||||| |   |||| |||  |||| |||||||||| || ||||| || |||||||| ||||||||||| |||||||| |||||    
T  9030701 gaggtgcaaaagattatttagatgaaggtgatcttcaaaatttaccttatttgaatgcagtgattaaagagacgttaagattgcatctacc 9030791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 8914822 - 8914611
Alignment:
Q  25 gccacatcagtttgggctataacctccctaataaaaaacccaagagtaatgaagaaagtacaagaagaaattaggaacttgggaagtaaaaaagaattca 124  Q
    |||||| ||||||||||||| ||  || |||||||||| |||||||||||||||||||||||| |||| |||||||| |   ||  |||||||||||| |    
T  8914822 gccacagcagtttgggctatgactgccttaataaaaaatccaagagtaatgaagaaagtacaacaagagattaggaattcaagagttaaaaaagaattta 8914723  T
Q  125 tagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagattgcacctacctaccccactacttgttccaagagaatc 224  Q
    |||| ||| ||||||| | ||||||  | || ||||||||||||||||||||||| ||||||||| |||| ||  ||||| | ||||  ||||||||| |    
T  8914722 tagatgaagatgatatacgaaatttgtcctacttaaaggcagtgataaaagagacattgagattgtacctgccagccccattgcttgcgccaagagaaac 8914623  T
Q  225 aagagaaaaatg 236  Q
    ||  ||||||||    
T  8914622 aactgaaaaatg 8914611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 8954751 - 8954968
Alignment:
Q  7 gcaacagagaccacagcagccacatcagtttgggctataacctccctaataaaaaacccaagagtaatgaagaaagtacaagaagaaattaggaacttgg 106  Q
    ||||| || |||||| ||||  |||||||||||||||| ||  | |||||||||||||| ||||||||||  |||||| |||||||||| || || ||||    
T  8954751 gcaaccgataccacatcagcagcatcagtttgggctatgactgctctaataaaaaaccctagagtaatgagtaaagtaaaagaagaaataagaaatttgg 8954850  T
Q  107 gaagtaaaaaagaattcatagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagattgcacctacctaccccact 206  Q
    ||  ||||||||| ||  || | ||| |||||||||||||||  || ||||| |||||  |  | ||||||||  | ||||| ||||||||  |||||||    
T  8954851 gagttaaaaaagattttttatatgaagatgatattcaaaattgtccttatttgaaggctatagttaaagagacactaagattacacctaccagccccact 8954950  T
Q  207 acttgttccaagagaatc 224  Q
    |||||| ||||| |||||    
T  8954951 acttgtgccaagggaatc 8954968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 197
Target Start/End: Complemental strand, 8929732 - 8929572
Alignment:
Q  37 tgggctataacctccctaataaaaaacccaagagtaatgaagaaagtacaagaagaaattaggaacttgggaagtaaaaaagaattcatagacgaaaatg 136  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||||||||||||| ||||||   |   ||  |||||| || ||  |||||| | |||    
T  8929732 tgggctatgactgccctaataaaaaacccaagagtaatgaagaaagtacaagaagagattaggggatcaagagttaaaaaggattttctagacggagatg 8929633  T
Q  137 atattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagattgcacctacc 197  Q
    || | |||||||||   ||||| ||||| |||||||||||||| ||||||||| |||||||    
T  8929632 atctacaaaatttcgtctatttgaaggcggtgataaaagagacattgagattgtacctacc 8929572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 20074394 - 20074168
Alignment:
Q  7 gcaacagagaccacagcagccacatcagtttgggctataacctccctaataaaaaacccaagagtaatgaagaaagtacaagaagaaattaggaacttgg 106  Q
    |||||||| |||||| |||||||| |||| |||||||| ||  |  |||||||||| |||||||||||||||||||||||| |||| |||| ||| ||      
T  20074394 gcaacagataccacatcagccacaacagtatgggctatgactgcattaataaaaaatccaagagtaatgaagaaagtacaacaagagatta-gaaattca 20074296  T
Q  107 gaag-taaaaaagaattcatagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagattgcacctacctaccccac 205  Q
     ||| |||||||||||| ||||| ||| ||||||| ||||||||| | || || ||||||||||||||||||||  |||||||| || | ||  |||||     
T  20074295 aaagttaaaaaagaatttatagatgaagatgatatacaaaatttctcctacttgaaggcagtgataaaagagacactgagattgtacttgccagccccat 20074196  T
Q  206 tacttgttccaagagaatcaagagaaaa 233  Q
    | ||||| ||||||||| |||| |||||    
T  20074195 tgcttgtgccaagagaaacaagggaaaa 20074168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 9400632 - 9400451
Alignment:
Q  7 gcaacagagaccacagcagccacatcagtttgggctataacctccctaataaaaaacccaagagtaatgaagaaagtacaagaagaaattaggaacttgg 106  Q
    |||||||| || ||| |||| |||| ||||||||| || ||   ||||||||| |||||   ||||||||||||||||||| |||| |||||||  |       
T  9400632 gcaacagatacaacatcagctacattagtttgggcaatgactgtcctaataaagaaccctgcagtaatgaagaaagtacaacaagagattaggagttcaa 9400533  T
Q  107 gaagtaaaaaagaattcatagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagatt 188  Q
    ||  ||||||||| ||  |||| ||| ||||||| ||||||||| | || || |||||||| ||||||||||| ||||||||    
T  9400532 gagttaaaaaagactttttagatgaagatgatatacaaaatttctcctacttgaaggcagtcataaaagagacattgagatt 9400451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 3620138 - 3619978
Alignment:
Q  22 gcagccacatcagtttgggctataacctccctaataaaaaacccaagagtaatgaagaaagtacaagaagaaattaggaacttgggaagtaaaaaagaat 121  Q
    |||||||||||||||||||  || |||    ||||||| || ||||||| |||||||||||  |||||||||||||| ||| |       |||||||| |    
T  3620138 gcagccacatcagtttgggtgatgaccggattaataaagaatccaagagcaatgaagaaagctcaagaagaaattagaaacatc------aaaaaagagt 3620045  T
Q  122 tcatagacgaaaatgatattcaaaatttcccatatttaaaggcagtgataaaagagacgttgagatt 188  Q
    ||||||| ||| ||||||||||||| ||   |||||| ||||| |||||||||||||| || |||||    
T  3620044 tcatagatgaagatgatattcaaaagtttgtatattttaaggctgtgataaaagagacattaagatt 3619978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 3630478 - 3630396
Alignment:
Q  64 ccaagagtaatgaagaaagtacaagaagaaattaggaacttgggaagtaaaaaagaattcatagacgaaaatgatattcaaaa 146  Q
    ||||||| |||||||||||  |||||||||||||| ||| |  |  | |||||||| |||||||| ||| |||||||||||||    
T  3630478 ccaagagcaatgaagaaagctcaagaagaaattagaaacatatgtggcaaaaaagagttcatagatgaagatgatattcaaaa 3630396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 15607 - 15689
Alignment:
Q  64 ccaagagtaatgaagaaagtacaagaagaaattaggaacttgggaagtaaaaaagaattcatagacgaaaatgatattcaaaa 146  Q
    ||||||| |||||||||||  |||||||||||||| ||| |  |  | |||||||| |||||||| ||| |||||||||||||    
T  15607 ccaagagcaatgaagaaagctcaagaagaaattagaaacatatgtggcaaaaaagagttcatagatgaagatgatattcaaaa 15689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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