View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16435_high_3 (Length: 602)

Name: NF16435_high_3
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16435_high_3
NF16435_high_3
[»] chr6 (11 HSPs)
chr6 (239-580)||(5008985-5009326)
chr6 (18-215)||(5008763-5008960)
chr6 (99-134)||(26521136-26521171)
chr6 (165-215)||(2251912-2251962)
chr6 (165-215)||(18904339-18904388)
chr6 (100-134)||(26522478-26522512)
chr6 (87-128)||(20698122-20698163)
chr6 (93-133)||(12276253-12276293)
chr6 (100-128)||(14441482-14441510)
chr6 (100-128)||(18254128-18254156)
chr6 (89-133)||(32193881-32193925)
[»] chr7 (22 HSPs)
chr7 (100-152)||(5526731-5526783)
chr7 (91-137)||(21099791-21099837)
chr7 (165-215)||(28799967-28800017)
chr7 (100-135)||(1398417-1398452)
chr7 (91-138)||(20205819-20205866)
chr7 (94-133)||(27383733-27383772)
chr7 (97-128)||(42817613-42817644)
chr7 (99-137)||(2766221-2766259)
chr7 (165-215)||(28800160-28800210)
chr7 (100-133)||(4340133-4340166)
chr7 (100-133)||(7872770-7872803)
chr7 (100-133)||(8615029-8615062)
chr7 (100-133)||(13044164-13044197)
chr7 (100-133)||(18714454-18714487)
chr7 (100-133)||(21050244-21050277)
chr7 (100-133)||(24991787-24991820)
chr7 (165-214)||(27162243-27162291)
chr7 (91-128)||(42336067-42336104)
chr7 (100-133)||(46987092-46987125)
chr7 (101-133)||(27833423-27833455)
chr7 (101-153)||(35396640-35396692)
chr7 (89-133)||(44770165-44770209)
[»] chr8 (14 HSPs)
chr8 (89-154)||(3757958-3758023)
chr8 (97-133)||(42208491-42208527)
chr8 (100-134)||(1244726-1244760)
chr8 (99-133)||(13575294-13575328)
chr8 (165-215)||(34873160-34873209)
chr8 (91-152)||(8137932-8137993)
chr8 (100-133)||(8910003-8910036)
chr8 (100-133)||(9656019-9656052)
chr8 (100-133)||(17704019-17704052)
chr8 (101-134)||(19488307-19488340)
chr8 (100-133)||(19778071-19778104)
chr8 (100-133)||(30623299-30623332)
chr8 (102-134)||(5179801-5179833)
chr8 (89-133)||(7869663-7869707)
[»] chr5 (17 HSPs)
chr5 (100-153)||(20114711-20114764)
chr5 (165-214)||(25460728-25460777)
chr5 (89-124)||(6226335-6226370)
chr5 (95-133)||(5846030-5846068)
chr5 (165-215)||(6734686-6734735)
chr5 (165-215)||(33372949-33372998)
chr5 (99-137)||(37054287-37054325)
chr5 (100-137)||(10199025-10199062)
chr5 (100-133)||(11844460-11844493)
chr5 (100-133)||(16133087-16133120)
chr5 (100-133)||(18391606-18391639)
chr5 (165-215)||(30819309-30819361)
chr5 (100-133)||(36321516-36321549)
chr5 (100-128)||(3445274-3445302)
chr5 (92-148)||(5243837-5243893)
chr5 (89-133)||(32622890-32622934)
chr5 (100-132)||(33133645-33133677)
[»] chr2 (22 HSPs)
chr2 (89-142)||(14925245-14925298)
chr2 (100-133)||(32167820-32167853)
chr2 (89-133)||(25562019-25562063)
chr2 (93-128)||(28163926-28163961)
chr2 (90-133)||(43117212-43117255)
chr2 (100-134)||(7413210-7413244)
chr2 (99-133)||(12124550-12124584)
chr2 (99-133)||(28771587-28771621)
chr2 (99-133)||(35685083-35685117)
chr2 (100-133)||(12124690-12124723)
chr2 (100-133)||(18231495-18231528)
chr2 (100-133)||(19179072-19179105)
chr2 (100-133)||(20120743-20120776)
chr2 (100-133)||(24593382-24593415)
chr2 (88-133)||(25598584-25598629)
chr2 (166-215)||(32854607-32854655)
chr2 (105-134)||(38750801-38750830)
chr2 (143-212)||(39635352-39635420)
chr2 (100-133)||(40099405-40099438)
chr2 (104-136)||(2661067-2661099)
chr2 (100-128)||(7052779-7052807)
chr2 (101-133)||(31963088-31963120)
[»] scaffold2055 (1 HSPs)
scaffold2055 (100-140)||(1043-1083)
[»] chr4 (23 HSPs)
chr4 (89-133)||(33413352-33413396)
chr4 (89-133)||(43782327-43782371)
chr4 (99-133)||(14577529-14577563)
chr4 (91-133)||(16304120-16304162)
chr4 (99-133)||(18915068-18915102)
chr4 (99-133)||(34247445-34247479)
chr4 (100-133)||(7230286-7230319)
chr4 (100-133)||(10303533-10303566)
chr4 (100-133)||(22279542-22279575)
chr4 (100-137)||(25999403-25999440)
chr4 (100-133)||(31780751-31780784)
chr4 (100-133)||(46676520-46676553)
chr4 (100-133)||(49949340-49949373)
chr4 (100-133)||(56551614-56551647)
chr4 (105-133)||(1753374-1753402)
chr4 (93-133)||(2649755-2649795)
chr4 (89-133)||(8027419-8027463)
chr4 (146-214)||(21553654-21553721)
chr4 (102-134)||(24785483-24785515)
chr4 (102-134)||(24822751-24822783)
chr4 (93-133)||(33900746-33900786)
chr4 (167-215)||(35851650-35851697)
chr4 (97-133)||(39093597-39093633)
[»] chr3 (23 HSPs)
chr3 (155-215)||(9219834-9219893)
chr3 (91-133)||(10926466-10926508)
chr3 (100-134)||(13992677-13992711)
chr3 (165-215)||(25883935-25883984)
chr3 (165-215)||(36472378-36472427)
chr3 (99-133)||(54230121-54230155)
chr3 (100-133)||(1149091-1149124)
chr3 (100-133)||(8113584-8113617)
chr3 (100-133)||(16980376-16980409)
chr3 (100-133)||(35191839-35191872)
chr3 (158-215)||(36478135-36478191)
chr3 (101-134)||(39822193-39822226)
chr3 (164-201)||(40177118-40177155)
chr3 (164-201)||(40178649-40178686)
chr3 (100-133)||(41737802-41737835)
chr3 (100-133)||(45254237-45254270)
chr3 (100-133)||(46469283-46469316)
chr3 (100-133)||(52119382-52119415)
chr3 (100-133)||(52904165-52904198)
chr3 (99-128)||(55198887-55198916)
chr3 (100-128)||(21513294-21513322)
chr3 (93-133)||(35492792-35492832)
chr3 (165-209)||(49028896-49028939)
[»] chr1 (17 HSPs)
chr1 (97-133)||(2817395-2817431)
chr1 (91-139)||(9374379-9374427)
chr1 (97-133)||(34253735-34253771)
chr1 (165-215)||(18512522-18512571)
chr1 (99-133)||(31890771-31890805)
chr1 (93-155)||(32874389-32874451)
chr1 (100-133)||(6645212-6645245)
chr1 (100-133)||(17283957-17283990)
chr1 (100-133)||(19262929-19262962)
chr1 (100-133)||(29739343-29739376)
chr1 (100-133)||(34733406-34733439)
chr1 (100-133)||(38448888-38448921)
chr1 (100-133)||(41926828-41926861)
chr1 (100-133)||(50638938-50638971)
chr1 (89-133)||(3509963-3510007)
chr1 (100-128)||(23228522-23228550)
chr1 (100-128)||(47528474-47528502)
[»] scaffold0154 (1 HSPs)
scaffold0154 (99-133)||(10779-10813)
[»] scaffold0005 (1 HSPs)
scaffold0005 (99-133)||(239812-239846)
[»] scaffold0259 (1 HSPs)
scaffold0259 (99-136)||(19393-19430)


Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 239 - 580
Target Start/End: Original strand, 5008985 - 5009326
Alignment:
Q  239 tatgcgtacgtttcttttatctttaattttacacattaatcattgactttctttttgtagaaaagcatgcaattaatccacttgtgattgtgtcatatat 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5008985 tatgcgtacgtttcttttatctttaattttacacattaatcattgactttctttttgtagaaaagcatgcaattaatccacttgtgattgtgtcatatat 5009084  T
Q  339 gctgtggattctcagtgataatcacaacttgcctaccttgcactgccctcatggatatctctatgcattgaaattttgtggtcctaaagtgttgtaaata 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5009085 gctgtggattctcagtgataatcacaacttgcctaccttgcactgcccccatggatatctctatgcattgaaattttgtggtcctaaagtgttgtaaata 5009184  T
Q  439 aaagataacaaatattggtccctcacatttgtccgaataagtagaattatcatacacaaagacatgtgaaaataccttccacaacttttgaatctaatta 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5009185 aaagataacaaatattggtccctcacatttgtccgaataagtagaattatcatacacaaagacatgtgacaataccttccacaacttttgaatctaatta 5009284  T
Q  539 ctaaatgacttatccaaagttggtttctttgtttgctctcca 580  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5009285 ctaaatgacttatccaaagttggtttctttgtttgctctcca 5009326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 5008763 - 5008960
Alignment:
Q  18 acatctagctcattatgtgtgaaggctaaaatagtttgcaaatcgcctttgtaaaatgaagaagggaagaattctcgtaaatttagctcagttggtaagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5008763 acatctagctcattatgtgtgaaggctaaaatagtttgcaaatcgcctttgtaaaatgaagaagggaagaatcctcgtaaatttagctcagttggtaagg 5008862  T
Q  118 acaatgcataacatatataaaagttggggttcaaattctagacatttcacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5008863 acaatgcataatatatataagagttggggttcaaattctagacatttcacttctgcacatttaaaaatgtgtgagctccagccactagactacttgac 5008960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 134
Target Start/End: Complemental strand, 26521171 - 26521136
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatata 134  Q
    |||||||||||||||||||||||||||||| |||||    
T  26521171 tttagctcagttggtaaggacaatgcataatatata 26521136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 2251912 - 2251962
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||||| |||||||||||||| ||||||||  |||||||| |||||||||    
T  2251912 cacttctccacatttaaaaatgtgtgagctctggccactaggctacttgac 2251962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 18904339 - 18904388
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||| ||||    
T  18904339 cacttctccacatttaaaa-tgtgtgagctccagccactagactacctgac 18904388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 26522478 - 26522512
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatata 134  Q
    ||||||||||||||||||||||||||||| |||||    
T  26522478 ttagctcagttggtaaggacaatgcataatatata 26522512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 20698163 - 20698122
Alignment:
Q  87 aattctcgtaaatttagctcagttggtaaggacaatgcataa 128  Q
    ||||||| | |||||||||||||||||| |||||||||||||    
T  20698163 aattctcatgaatttagctcagttggtatggacaatgcataa 20698122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 12276293 - 12276253
Alignment:
Q  93 cgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||| ||||||||||||||||| ||||||||||| ||||    
T  12276293 cgtaaacttagctcagttggtaagaacaatgcataatatat 12276253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 14441510 - 14441482
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataa 128  Q
    |||||||||||||||||||||||||||||    
T  14441510 ttagctcagttggtaaggacaatgcataa 14441482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 18254156 - 18254128
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataa 128  Q
    |||||||||||||||||||||||||||||    
T  18254156 ttagctcagttggtaaggacaatgcataa 18254128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 32193925 - 32193881
Alignment:
Q  89 ttctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||| | |||||||||||||||||| ||||||||||| ||||    
T  32193925 ttctcgtgagtttagctcagttggtaagaacaatgcataatatat 32193881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 5526731 - 5526783
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatatataaaagttggggttcaaa 152  Q
    ||||||||||||||| ||||||||||||| |||||||| | ||||||||||||    
T  5526731 ttagctcagttggtatggacaatgcataatatatataagatttggggttcaaa 5526783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 21099837 - 21099791
Alignment:
Q  91 ctcgtaaatttagctcagttggtaaggacaatgcataacatatataa 137  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||||||    
T  21099837 ctcgtgaatttagctcagttggtatggacaatgcataatatatataa 21099791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 28800017 - 28799967
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    |||||||  ||||||||||||| |||||||||| |||||||||||||||||    
T  28800017 cacttctctacatttaaaaatgtgtgagctccaaccactagactacttgac 28799967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 1398452 - 1398417
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatatat 135  Q
    ||||||||||||||||||||||||||||| ||||||    
T  1398452 ttagctcagttggtaaggacaatgcataatatatat 1398417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 20205819 - 20205866
Alignment:
Q  91 ctcgtaaatttagctcagttggtaaggacaatgcataacatatataaa 138  Q
    ||||||| |||||||||||||||| ||||||||||||| |||| ||||    
T  20205819 ctcgtaagtttagctcagttggtatggacaatgcataatatatgtaaa 20205866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 27383733 - 27383772
Alignment:
Q  94 gtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  27383733 gtaaatttagctcagttggtaaggacaatgtataaaatat 27383772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 128
Target Start/End: Original strand, 42817613 - 42817644
Alignment:
Q  97 aatttagctcagttggtaaggacaatgcataa 128  Q
    ||||||||||||||||||||||||||||||||    
T  42817613 aatttagctcagttggtaaggacaatgcataa 42817644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 2766259 - 2766221
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatatataa 137  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  2766259 tttagctcagtaggtaaggacaatgcataaaatatataa 2766221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 28800160 - 28800210
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||||| |||||||||||| | ||||||| || |||||||||||||||||    
T  28800160 cacttctccacatttaaaaaggtgtgagcttcaaccactagactacttgac 28800210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 4340133 - 4340166
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  4340133 ttagctcagttggtaaggacaatgcataatatat 4340166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 7872803 - 7872770
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  7872803 ttagctcagttggtaaggacaatgcataatatat 7872770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 8615029 - 8615062
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  8615029 ttagctcagttggtaaggacaatgcataatatat 8615062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 13044197 - 13044164
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  13044197 ttagctcagttggtaaggacaatgcataaaatat 13044164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 18714454 - 18714487
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  18714454 ttagctcagttggtaaggacaatgcataatatat 18714487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 21050277 - 21050244
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  21050277 ttagctcagttggtaaggacaatgcataatatat 21050244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 24991787 - 24991820
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  24991787 ttagctcagttggtaaggacaatgcataatatat 24991820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 27162291 - 27162243
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagactacttga 214  Q
    ||||||||||||||||||| || |||||||||||||| |||| |||||||    
T  27162291 cacttctgcacatttaaaa-tgtgtgagctccagccattagattacttga 27162243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 42336067 - 42336104
Alignment:
Q  91 ctcgtaaatttagctcagttggtaaggacaatgcataa 128  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  42336067 ctcgtgaatttagctcagttgataaggacaatgcataa 42336104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 46987092 - 46987125
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  46987092 ttagctcagttggtaaggacaatgcataatatat 46987125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 27833455 - 27833423
Alignment:
Q  101 tagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||| ||||    
T  27833455 tagctcagttggtaaggacaatgcataatatat 27833423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 35396640 - 35396692
Alignment:
Q  101 tagctcagttggtaaggacaatgcataacatatataaaagttggggttcaaat 153  Q
    ||||||| |||||||||| ||||||||| ||||||||   |||||||||||||    
T  35396640 tagctcaattggtaaggataatgcataaaatatataacgtttggggttcaaat 35396692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 44770209 - 44770165
Alignment:
Q  89 ttctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||| ||| ||||||||||| ||||||||||||| ||||    
T  44770209 ttctcgtaaacttaactcagttggtatggacaatgcataaaatat 44770165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 3758023 - 3757958
Alignment:
Q  89 ttctcgtaaatttagctcagttggtaaggacaatgcataacatatataaaagttggggttcaaatt 154  Q
    ||||||||||||||||||||||| || | ||||||||||| |||| ||| |  |||||||||||||    
T  3758023 ttctcgtaaatttagctcagttgataggaacaatgcataatatatgtaagatctggggttcaaatt 3757958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 42208527 - 42208491
Alignment:
Q  97 aatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||||| ||||    
T  42208527 aatttagctcagttggtaaggacaatgcataatatat 42208491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 1244760 - 1244726
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatata 134  Q
    ||||||||||||||||||||||||||||| |||||    
T  1244760 ttagctcagttggtaaggacaatgcataatatata 1244726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 13575294 - 13575328
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||| ||||||||||||||||||    
T  13575294 tttagctcagttggtagggacaatgcataacatat 13575328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 34873160 - 34873209
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||||| ||||||||||| || |||||||||||||||||||||| |||||    
T  34873160 cacttctccacatttaaaa-tgtgtgagctccagccactagactatttgac 34873209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 8137932 - 8137993
Alignment:
Q  91 ctcgtaaatttagctcagttggtaaggacaatgcataacatatataaaagttggggttcaaa 152  Q
    |||||||  ||||||||||||||| ||||||||||||| ||||  |||  ||||||||||||    
T  8137932 ctcgtaagcttagctcagttggtatggacaatgcataaaatatgcaaagtttggggttcaaa 8137993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 8910036 - 8910003
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  8910036 ttagctcagttggtaaggacaatgcataatatat 8910003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 9656052 - 9656019
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  9656052 ttagctcagttggtaaggacaatgcataaaatat 9656019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 17704019 - 17704052
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  17704019 ttagctcagttggtaaggacaatgcataatatat 17704052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 19488307 - 19488340
Alignment:
Q  101 tagctcagttggtaaggacaatgcataacatata 134  Q
    |||||||||||||||||||||||||||| |||||    
T  19488307 tagctcagttggtaaggacaatgcataatatata 19488340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 19778071 - 19778104
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  19778071 ttagctcagttggtaaggacaatgcataatatat 19778104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 30623299 - 30623332
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  30623299 ttagctcagttggtaaggacaatgcataatatat 30623332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 5179801 - 5179833
Alignment:
Q  102 agctcagttggtaaggacaatgcataacatata 134  Q
    ||||||||||||||||||||||||||| |||||    
T  5179801 agctcagttggtaaggacaatgcataatatata 5179833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 7869707 - 7869663
Alignment:
Q  89 ttctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||| |||| |||||||||| |||||||||||||| ||||    
T  7869707 ttctcgtaagtttaactcagttggtgaggacaatgcataatatat 7869663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 20114711 - 20114764
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatatataaaagttggggttcaaat 153  Q
    ||||||||||||||||||||||||||||| ||||| |||  ||| |||||||||    
T  20114711 ttagctcagttggtaaggacaatgcataaaatatacaaagtttgaggttcaaat 20114764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 25460777 - 25460728
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagactacttga 214  Q
    ||||||| |||||||||||||| |||||||| | ||||||||||||||||    
T  25460777 cacttctccacatttaaaaatgtgtgagctctaaccactagactacttga 25460728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 6226370 - 6226335
Alignment:
Q  89 ttctcgtaaatttagctcagttggtaaggacaatgc 124  Q
    ||||||| ||||||||||||||||||||||||||||    
T  6226370 ttctcgtgaatttagctcagttggtaaggacaatgc 6226335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 5846030 - 5846068
Alignment:
Q  95 taaatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  5846030 taaacttagctcagttggtaaggacaatgcataatatat 5846068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 6734735 - 6734686
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||||| ||||||||||| || |||||||||||||||||||||| |||||    
T  6734735 cacttctccacatttaaaa-tgtgtgagctccagccactagactaattgac 6734686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 33372998 - 33372949
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||||| ||||||||||| || || |||||||||||||||||||||||||    
T  33372998 cacttctccacatttaaaa-tgtgtaagctccagccactagactacttgac 33372949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 37054325 - 37054287
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatatataa 137  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  37054325 tttagctcagttggtagggacaatgcataatatatataa 37054287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 10199025 - 10199062
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatatataa 137  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  10199025 ttagctcagttggtatggacaatgcataatatatataa 10199062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 11844493 - 11844460
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  11844493 ttagctcagttggtaaggacaatgcataatatat 11844460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 16133120 - 16133087
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  16133120 ttagctcagttggtaaggacaatgcataatatat 16133087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 18391606 - 18391639
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  18391606 ttagctcagttggtaaggacaatgcataaaatat 18391639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 30819309 - 30819361
Alignment:
Q  165 cacttctgcacatttaaaaa--tgcgtgagctccagccactagactacttgac 215  Q
    ||||||| ||||||||||||  || ||||||||||||||| ||||||||||||    
T  30819309 cacttctccacatttaaaaaaatgtgtgagctccagccaccagactacttgac 30819361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 36321549 - 36321516
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  36321549 ttagctcagttggtaaggacaatgcataatatat 36321516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 3445302 - 3445274
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataa 128  Q
    |||||||||||||||||||||||||||||    
T  3445302 ttagctcagttggtaaggacaatgcataa 3445274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 5243893 - 5243837
Alignment:
Q  92 tcgtaaatttagctcagttggtaaggacaatgcataacatatataaaagttggggtt 148  Q
    |||||| ||||| ||| || ||||||||||||||||| |||||||||| ||| ||||    
T  5243893 tcgtaagtttagttcaattagtaaggacaatgcataatatatataaaatttgaggtt 5243837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 32622890 - 32622934
Alignment:
Q  89 ttctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||| |||||||||||||||||| |||||||| |||| ||||    
T  32622890 ttctcgtgaatttagctcagttggtatggacaatgtataaaatat 32622934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 33133645 - 33133677
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacata 132  Q
    ||||||||||||||| |||||||||||||||||    
T  33133645 ttagctcagttggtagggacaatgcataacata 33133677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 14925298 - 14925245
Alignment:
Q  89 ttctcgtaaatttagctcagttggtaaggacaatgcataacatatataaaagtt 142  Q
    |||||||||||||| |||||||||||||||||||| |||| ||||  |||||||    
T  14925298 ttctcgtaaatttaactcagttggtaaggacaatgtataatatatgcaaaagtt 14925245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 32167853 - 32167820
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||||||||    
T  32167853 ttagctcagttggtaaggacaatgcataacatat 32167820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 25562063 - 25562019
Alignment:
Q  89 ttctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||| ||||||||||||||||||||| ||||||| ||||    
T  25562063 ttctcgtaaacttagctcagttggtaaggacagtgcataaaatat 25562019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 28163926 - 28163961
Alignment:
Q  93 cgtaaatttagctcagttggtaaggacaatgcataa 128  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28163926 cgtaaatttagctcagttgataaggacaatgcataa 28163961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 43117255 - 43117212
Alignment:
Q  90 tctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||| | |||||||||||||||||||||||||||||| ||||    
T  43117255 tctcgtgagtttagctcagttggtaaggacaatgcataatatat 43117212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 7413244 - 7413210
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatata 134  Q
    ||||||||||||||||||||||||||||| |||||    
T  7413244 ttagctcagttggtaaggacaatgcataatatata 7413210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 12124550 - 12124584
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||| ||||    
T  12124550 tttagctcagttggtaaggacaatgcataatatat 12124584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 28771587 - 28771621
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||| ||||    
T  28771587 tttagctcagttggtaaggacaatgcataatatat 28771621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 35685117 - 35685083
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||| ||||    
T  35685117 tttagctcagttggtaaggacaatgcataatatat 35685083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 12124690 - 12124723
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  12124690 ttagctcagttggtaaggacaatgcataatatat 12124723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 18231528 - 18231495
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  18231528 ttagctcagttggtaaggacaatgcataatatat 18231495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 19179105 - 19179072
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  19179105 ttagctcagttggtaaggacaatgcataatatat 19179072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 20120776 - 20120743
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  20120776 ttagctcagttggtaaggacaatgcataatatat 20120743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 24593382 - 24593415
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  24593382 ttagctcagttggtaaggacaatgcataatatat 24593415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 25598629 - 25598584
Alignment:
Q  88 attctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||| || ||||||||||||||| ||||||||||||| ||||    
T  25598629 attctcgtgaacttagctcagttggtatggacaatgcataatatat 25598584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 32854607 - 32854655
Alignment:
Q  166 acttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    |||||| ||||||||||| || |||||||||||||||||| |||||||||    
T  32854607 acttctccacatttaaaa-tgtgtgagctccagccactaggctacttgac 32854655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 134
Target Start/End: Complemental strand, 38750830 - 38750801
Alignment:
Q  105 tcagttggtaaggacaatgcataacatata 134  Q
    ||||||||||||||||||||||||||||||    
T  38750830 tcagttggtaaggacaatgcataacatata 38750801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 39635352 - 39635420
Alignment:
Q  143 ggggttcaaattctagacatttcacttctgcacatttaaaaatgcgtgagctccagccactagactactt 212  Q
    ||||||| || || ||||| | ||||||| ||||||||||| || |||| ||||||||||||||||||||    
T  39635352 ggggttcgaactccagacactccacttctccacatttaaaa-tgtgtgatctccagccactagactactt 39635420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 40099438 - 40099405
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  40099438 ttagctcagttggtaaggacaatgcataatatat 40099405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 2661099 - 2661067
Alignment:
Q  104 ctcagttggtaaggacaatgcataacatatata 136  Q
    ||||||||||||||||||||||||| |||||||    
T  2661099 ctcagttggtaaggacaatgcataatatatata 2661067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 7052779 - 7052807
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataa 128  Q
    |||||||||||||||||||||||||||||    
T  7052779 ttagctcagttggtaaggacaatgcataa 7052807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 31963120 - 31963088
Alignment:
Q  101 tagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||| ||||    
T  31963120 tagctcagttggtaaggacaatgcataatatat 31963088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2055 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold2055
Description:

Target: scaffold2055; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 1043 - 1083
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatatataaaag 140  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  1043 ttagctcagttggtaaggacaatacataatatatataaaag 1083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 33413396 - 33413352
Alignment:
Q  89 ttctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||||    
T  33413396 ttctcgtgaatttagctcagttgataaggacaatgcataatatat 33413352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 43782371 - 43782327
Alignment:
Q  89 ttctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||| |||||||||||||||| |||||||||||| ||||    
T  43782371 ttctcgtaaacttagctcagttggtaatgacaatgcataatatat 43782327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 14577563 - 14577529
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||| ||||    
T  14577563 tttagctcagttggtaaggacaatgcataatatat 14577529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 16304162 - 16304120
Alignment:
Q  91 ctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||    
T  16304162 ctcgtaagtttagctcagttggtatggacaatgcataatatat 16304120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 18915102 - 18915068
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||| ||||    
T  18915102 tttagctcagttggtaaggacaatgcataatatat 18915068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 34247445 - 34247479
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||| ||||    
T  34247445 tttagctcagttggtaaggacaatgcataatatat 34247479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 7230286 - 7230319
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  7230286 ttagctcagttggtaaggacaatgcataatatat 7230319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 10303566 - 10303533
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  10303566 ttagctcagttggtaaggacaatgcataaaatat 10303533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 22279575 - 22279542
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  22279575 ttagctcagttggtaaggacaatgcataatatat 22279542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 25999403 - 25999440
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatatataa 137  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  25999403 ttagctcagttggtagggacaatgcataatatatataa 25999440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 31780751 - 31780784
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  31780751 ttagctcagttggtaaggacaatgcataaaatat 31780784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 46676553 - 46676520
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  46676553 ttagctcagttggtaaggacaatgcataatatat 46676520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 49949340 - 49949373
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  49949340 ttagctcagttggtaaggacaatgcataatatat 49949373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 56551647 - 56551614
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  56551647 ttagctcagttggtaaggacaatgcataatatat 56551614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 1753402 - 1753374
Alignment:
Q  105 tcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||    
T  1753402 tcagttggtaaggacaatgcataacatat 1753374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 2649795 - 2649755
Alignment:
Q  93 cgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||| |||||||||||||||| ||||||||||||| ||||    
T  2649795 cgtaagtttagctcagttggtagggacaatgcataatatat 2649755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 8027463 - 8027419
Alignment:
Q  89 ttctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||| | |||||||||||||||||||| ||||||||| ||||    
T  8027463 ttctcgtgagtttagctcagttggtaaggataatgcataatatat 8027419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 21553654 - 21553721
Alignment:
Q  146 gttcaaattctagacatttcacttctgcacatttaaaaatgcgtgagctccagccactagactacttga 214  Q
    |||| ||| |||||||||||| |||| ||||||| |||||| ||||||||||  || ||||||||||||    
T  21553654 gttcgaatcctagacatttcatttcttcacattt-aaaatgtgtgagctccaatcattagactacttga 21553721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 24785515 - 24785483
Alignment:
Q  102 agctcagttggtaaggacaatgcataacatata 134  Q
    ||||||||||||||||||||||||||| |||||    
T  24785515 agctcagttggtaaggacaatgcataatatata 24785483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 24822751 - 24822783
Alignment:
Q  102 agctcagttggtaaggacaatgcataacatata 134  Q
    ||||||||||||||||||||||||||| |||||    
T  24822751 agctcagttggtaaggacaatgcataatatata 24822783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 33900786 - 33900746
Alignment:
Q  93 cgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||| ||| ||||||||||||||||||||||||| ||||    
T  33900786 cgtaaacttatctcagttggtaaggacaatgcataatatat 33900746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 35851697 - 35851650
Alignment:
Q  167 cttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||| ||||||||||| || | ||||||||||||||||||||||||||    
T  35851697 cttctccacatttaaaa-tgtgcgagctccagccactagactacttgac 35851650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 39093633 - 39093597
Alignment:
Q  97 aatttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  39093633 aatttagctcaattggtaaggacaatgcataatatat 39093597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 9219834 - 9219893
Alignment:
Q  155 ctagacatttcacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||||||||||||||| ||||||| |||||| ||||||||  |||||||| |||||||||    
T  9219834 ctagacatttcacttcttcacattt-aaaatgtgtgagctcatgccactaggctacttgac 9219893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 10926466 - 10926508
Alignment:
Q  91 ctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||  ||||||||||||||||||||||||||||| ||||    
T  10926466 ctcgtaagcttagctcagttggtaaggacaatgcataatatat 10926508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 13992677 - 13992711
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatata 134  Q
    ||||||||||||||||||||||||||||| |||||    
T  13992677 ttagctcagttggtaaggacaatgcataatatata 13992711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 25883984 - 25883935
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||||| ||||||||||| || |||||||||||||||||| |||||||||    
T  25883984 cacttctccacatttaaaa-tgtgtgagctccagccactaggctacttgac 25883935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 36472427 - 36472378
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||||| ||||    
T  36472427 cacttctccacatt-aaaaatgtgtgagctccagccactagactacctgac 36472378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 54230155 - 54230121
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||| ||||    
T  54230155 tttagctcagttggtaaggacaatgcataatatat 54230121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 1149124 - 1149091
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  1149124 ttagctcagttggtaaggacaatgcataatatat 1149091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 8113617 - 8113584
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  8113617 ttagctcagttggtaaggacaatgcataatatat 8113584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 16980409 - 16980376
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  16980409 ttagctcagttggtaaggacaatgcataatatat 16980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 35191872 - 35191839
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  35191872 ttagctcagttggtaaggacaatgcataatatat 35191839  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 36478191 - 36478135
Alignment:
Q  158 gacatttcacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||| |||||||| |||||| ||||||| |||||||||||||||||| |||| ||||    
T  36478191 gacatctcacttctccacatt-aaaaatgtgtgagctccagccactaggctacctgac 36478135  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 39822226 - 39822193
Alignment:
Q  101 tagctcagttggtaaggacaatgcataacatata 134  Q
    |||||||||||||||||||||||||||| |||||    
T  39822226 tagctcagttggtaaggacaatgcataatatata 39822193  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 40177155 - 40177118
Alignment:
Q  164 tcacttctgcacatttaaaaatgcgtgagctccagcca 201  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  40177155 tcacttcttcacatttaaaaatgtgtgagctccagcca 40177118  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 40178686 - 40178649
Alignment:
Q  164 tcacttctgcacatttaaaaatgcgtgagctccagcca 201  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  40178686 tcacttcttcacatttaaaaatgtgtgagctccagcca 40178649  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 41737802 - 41737835
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  41737802 ttagctcagttggtaaggacaatgcataaaatat 41737835  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 45254237 - 45254270
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  45254237 ttagctcagttggtaaggacaatgcataatatat 45254270  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 46469283 - 46469316
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  46469283 ttagctcagttggtaaggacaatgcataatatat 46469316  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 52119382 - 52119415
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  52119382 ttagctcagttggtaaggacaatgcataatatat 52119415  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 52904198 - 52904165
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  52904198 ttagctcagttggtaaggacaatgcataatatat 52904165  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 128
Target Start/End: Original strand, 55198887 - 55198916
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataa 128  Q
    ||||||||||||||||||||||||||||||    
T  55198887 tttagctcagttggtaaggacaatgcataa 55198916  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 21513294 - 21513322
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataa 128  Q
    |||||||||||||||||||||||||||||    
T  21513294 ttagctcagttggtaaggacaatgcataa 21513322  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 35492792 - 35492832
Alignment:
Q  93 cgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||| ||||||||||||||||| ||||||||||| ||||    
T  35492792 cgtaaacttagctcagttggtaagaacaatgcataatatat 35492832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 49028939 - 49028896
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagacta 209  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||    
T  49028939 cacttctccacatttaaaa-tgcgtgagctccaaccactagacta 49028896  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 2817431 - 2817395
Alignment:
Q  97 aatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||||| ||||    
T  2817431 aatttagctcagttggtaaggacaatgcataatatat 2817395  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 9374379 - 9374427
Alignment:
Q  91 ctcgtaaatttagctcagttggtaaggacaatgcataacatatataaaa 139  Q
    ||||||||| ||||||||||| || ||||||||||||| ||||||||||    
T  9374379 ctcgtaaatctagctcagttgatagggacaatgcataatatatataaaa 9374427  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 34253771 - 34253735
Alignment:
Q  97 aatttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||||| ||||    
T  34253771 aatttagctcagttggtaaggacaatgcataatatat 34253735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 18512571 - 18512522
Alignment:
Q  165 cacttctgcacatttaaaaatgcgtgagctccagccactagactacttgac 215  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||| ||||    
T  18512571 cacttctccacatttaaaa-tgtgtgagctccagccactagactacctgac 18512522  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 31890805 - 31890771
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||| ||||    
T  31890805 tttagctcagttggtaaggacaatgcataatatat 31890771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 32874451 - 32874389
Alignment:
Q  93 cgtaaatttagctcagttggtaaggacaatgcataacatatataaaagttggggttcaaattc 155  Q
    ||||| ||||||||||||||||||| |||||||||| |||| ||||  | ||||||| |||||    
T  32874451 cgtaagtttagctcagttggtaagggcaatgcataatatatgtaaagttcggggttcgaattc 32874389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 6645245 - 6645212
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  6645245 ttagctcagttggtaaggacaatgcataaaatat 6645212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 17283957 - 17283990
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  17283957 ttagctcagttggtaaggacaatgcataatatat 17283990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 19262962 - 19262929
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||| |||||||||||||||||||||    
T  19262962 ttagctcagttgataaggacaatgcataacatat 19262929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 29739343 - 29739376
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  29739343 ttagctcagttggtaaggacaatgcataaaatat 29739376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 34733406 - 34733439
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  34733406 ttagctcagttggtaaggacaatgcataatatat 34733439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 38448921 - 38448888
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  38448921 ttagctcagttggtaaggacaatgcataatatat 38448888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 41926828 - 41926861
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  41926828 ttagctcagttggtaaggacaatgcataatatat 41926861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 50638971 - 50638938
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||||||||||||||||||||||||| ||||    
T  50638971 ttagctcagttggtaaggacaatgcataatatat 50638938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 3510007 - 3509963
Alignment:
Q  89 ttctcgtaaatttagctcagttggtaaggacaatgcataacatat 133  Q
    ||||||| || ||||||||||||||| ||||||||||||| ||||    
T  3510007 ttctcgtgaacttagctcagttggtatggacaatgcataatatat 3509963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 23228550 - 23228522
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataa 128  Q
    |||||||||||||||||||||||||||||    
T  23228550 ttagctcagttggtaaggacaatgcataa 23228522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 47528502 - 47528474
Alignment:
Q  100 ttagctcagttggtaaggacaatgcataa 128  Q
    |||||||||||||||||||||||||||||    
T  47528502 ttagctcagttggtaaggacaatgcataa 47528474  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 10813 - 10779
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||| ||||    
T  10813 tttagctcagttggtaaggacaatgcataaaatat 10779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 239812 - 239846
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatat 133  Q
    |||||||||||||||||||||||||||||| ||||    
T  239812 tttagctcagttggtaaggacaatgcataatatat 239846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 19393 - 19430
Alignment:
Q  99 tttagctcagttggtaaggacaatgcataacatatata 136  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  19393 tttagatcagttggtaaggacaatgcataatatatata 19430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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