View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_high_4 (Length: 569)
Name: NF16435_high_4
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 12 - 553
Target Start/End: Original strand, 32840216 - 32840757
Alignment:
| Q |
12 |
atcatcaaagaactctcaagatcctccatcctcacccaaaaacaaacctccatttgattcgcaacaaccacattcatcttctgcaccggaacaatctgcc |
111 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840216 |
atcaccaaagaactctcaagatcctccatcctcacccaaaaacaaacctccatctgattcgcaacaaccacattcatcttctgcaccggaacaatctgcc |
32840315 |
T |
|
| Q |
112 |
tctggatcaaagaaacctgcctccactacgggacaagatgcctctgcaaccaagcaaactgcctcctcatcgggaaaacgtgtctccggcggactgacaa |
211 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32840316 |
tccggatcaaagaaacctgcctccagtacgggacaagatgcctctgcaaccaagcaaactgcctcctcatcggcaaaacgtgtctccggcggactgacaa |
32840415 |
T |
|
| Q |
212 |
aactactctctgaaacgggaaaagatgcctctacagcagaagaaggagcctctacacggggaaaagaatcttccacacaagaaaagtcaccatcggcacc |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840416 |
aactactctctgaaacgggaaaagatgcctctacagcagaagaaggtgcctctacaccgggaaaagaatcttccacacaagaaaagtcaccatcggcacc |
32840515 |
T |
|
| Q |
312 |
ggaacaaaaaccaccttctgctactggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcg |
411 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840516 |
ggaacaaaaaccaccttctgctactgaatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatca |
32840615 |
T |
|
| Q |
412 |
gatgctcctttagccagaactcatcgacttccagggtttctctcatcaggcaagtctgctgaaacatcagacaactctgatcaagaagaaaaagcaccat |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840616 |
gatgctcctttagccagaactcatcgacttccagggtttctctcatcaggcgagtctgctgaaacatcagacaactctgatcaagaagaaaaagcaccat |
32840715 |
T |
|
| Q |
512 |
ctgctgctaagaaagaagaaacaccatctgctaagaaagaag |
553 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840716 |
ctgctgctaagaaagaagaaacaccatctgctaagaaagaag |
32840757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 12 - 553
Target Start/End: Original strand, 32833802 - 32834343
Alignment:
| Q |
12 |
atcatcaaagaactctcaagatcctccatcctcacccaaaaacaaacctccatttgattcgcaacaaccacattcatcttctgcaccggaacaatctgcc |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833802 |
atcaccaaagaactctcaagatcctccatcctcacccaaaaacaaacctccatctgattcgcaacaaccacattcatcttctgcaccggaacaatctgcc |
32833901 |
T |
|
| Q |
112 |
tctggatcaaagaaacctgcctccactacgggacaagatgcctctgcaaccaagcaaactgcctcctcatcgggaaaacgtgtctccggcggactgacaa |
211 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
32833902 |
accggatcaaagaaacctgcctccactacgggacaagatgcctctgcaaccaagcaaactccctcctcatcgggaaaatgtgtctccggcggactgacaa |
32834001 |
T |
|
| Q |
212 |
aactactctctgaaacgggaaaagatgcctctacagcagaagaaggagcctctacacggggaaaagaatcttccacacaagaaaagtcaccatcggcacc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32834002 |
aactactctctgaaacgggaaaagatgcctctacagcagaagaaggagcctctacaccgggaaaagaatcttccacacaagaaaagtcaccatcagcacc |
32834101 |
T |
|
| Q |
312 |
ggaacaaaaaccaccttctgctactggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32834102 |
ggaacaaaaaccaccttctgctactggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcg |
32834201 |
T |
|
| Q |
412 |
gatgctcctttagccagaactcatcgacttccagggtttctctcatcaggcaagtctgctgaaacatcagacaactctgatcaagaagaaaaagcaccat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32834202 |
gatgctcctttagccagaactcatcgacttccagggtttctctcatcaggcaagtctgctgaaacatcagacaactctgatcaagaagaaaaagcaccat |
32834301 |
T |
|
| Q |
512 |
ctgctgctaagaaagaagaaacaccatctgctaagaaagaag |
553 |
Q |
| |
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||||| || || |||||||| || | ||||||||||||||| |
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| T |
32834302 |
ctgcttctcaggaagaagaaccatctgctgctaagaaagaag |
32834343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 337 - 461
Target Start/End: Complemental strand, 31682760 - 31682639
Alignment:
| Q |
337 |
ggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgctcctttagccagaactcatc |
436 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
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| T |
31682760 |
ggatcaaagctcattgtcataccttcaaggaaacctagt---ctccaagacacaccaatttatcatcctcaatcggatgctcctttagccggaactcatc |
31682664 |
T |
|
| Q |
437 |
gacttccagggtttctctcatcagg |
461 |
Q |
| |
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||||||| ||||||||||||||| |
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|
| T |
31682663 |
aacttccatcgtttctctcatcagg |
31682639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 497 - 553
Target Start/End: Original strand, 32840779 - 32840835
Alignment:
| Q |
497 |
aagaaaaagcaccatctgctgctaagaaagaagaaacaccatctgctaagaaagaag |
553 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840779 |
aagaagaagtaccatctgctgctaagaaagaagaaacaccatctgctaagaaagaag |
32840835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 543
Target Start/End: Original strand, 32834365 - 32834411
Alignment:
| Q |
497 |
aagaaaaagcaccatctgctgctaagaaagaagaaacaccatctgct |
543 |
Q |
| |
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||||| ||| |||||||||||||||||||||| || ||||||||||| |
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| T |
32834365 |
aagaagaagaaccatctgctgctaagaaagaaaaagcaccatctgct |
32834411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 543
Target Start/End: Original strand, 32840752 - 32840798
Alignment:
| Q |
497 |
aagaaaaagcaccatctgctgctaagaaagaagaaacaccatctgct |
543 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32840752 |
aagaagaagaaccatctgctgctaagaaagaagaagtaccatctgct |
32840798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 543
Target Start/End: Original strand, 32840830 - 32840876
Alignment:
| Q |
497 |
aagaaaaagcaccatctgctgctaagaaagaagaaacaccatctgct |
543 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
32840830 |
aagaagaagaaccatctgctgctaagaaagaagaagtaccatctgct |
32840876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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