View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_high_5 (Length: 542)
Name: NF16435_high_5
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Complemental strand, 27985245 - 27984737
Alignment:
| Q |
18 |
tgaagttatggtcagcatttacattccacagtgttttaaaataatgtatagaactacaatttaagttacatcattaggctttttggtatctctgcaaatt |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27985245 |
tgaagttatggtcagcatttacattgcacagtgttttaaaataatgtatagaactacaatttaagttacatcattaggctttttggtatctctgcaaatt |
27985146 |
T |
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| Q |
118 |
gcaattgattctttataatcttaaaatttcacaatggtcgcgactgaaattgcaattacaattatgactttgaaaaatatggctgattctgccacaattg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27985145 |
gcaattgattctttataatcttaaaatttcacaatggtcgcgactgaaattgcaattacaattctgactttgaaaaatatggctgattctgccacaattg |
27985046 |
T |
|
| Q |
218 |
taatcgcggtggtcgaaaaaccttggcgtcacaattgtaattgtggcaattgtggtggtcgaaaaaccttggtgtgatggtgtcacatcatcaagtgtag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27985045 |
taatcgcggtggtcgaaaaaccttggcgtcacaattgtaattgtggcaattgtggtggtcgaaaaaccttggtgtgatggtgtcacatcatcaagtgtag |
27984946 |
T |
|
| Q |
318 |
ttgctaacttaatgtaaaatcacactttgcatagttttaaattggggatgcgnnnnnnnnnnngtggctacactgcaaaccttatgtaggtgaaatacag |
417 |
Q |
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| T |
27984945 |
ttgctaacttaatgtaaaatcacactttgcatagttttaaattggggatgcg--tttttttttgtggctacactgcaaaccttatgtaggtgaaatgcag |
27984848 |
T |
|
| Q |
418 |
gaaaatgtgtccgatgcagttgaaattgtagttgtgatatcattgcagagacttcaaatccagaatattgtgcggtggaggaccgcaatttataaccatg |
517 |
Q |
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| T |
27984847 |
gaaaatgtgtccgatgcagttgaaattgtagttgtgatatcattgcagagacttcaaatccagaatattgtgcggtggaggaccgcaatttataaccatg |
27984748 |
T |
|
| Q |
518 |
cttctttgtgc |
528 |
Q |
| |
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||||||||||| |
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| T |
27984747 |
cttctttgtgc |
27984737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Complemental strand, 28042547 - 28042039
Alignment:
| Q |
18 |
tgaagttatggtcagcatttacattccacagtgttttaaaataatgtatagaactacaatttaagttacatcattaggctttttggtatctctgcaaatt |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28042547 |
tgaagttatggtcagcatttacattgcacagtgttttaaaataatgtatagaactacaatttaagttacatcattaggctttttggtatctctgcaaatt |
28042448 |
T |
|
| Q |
118 |
gcaattgattctttataatcttaaaatttcacaatggtcgcgactgaaattgcaattacaattatgactttgaaaaatatggctgattctgccacaattg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28042447 |
gcaattgattctttataatcttaaaatttcacaatggtcgcgactgaaattgcaattacaattctgactttgaaaaatatggctgattctgccacaattg |
28042348 |
T |
|
| Q |
218 |
taatcgcggtggtcgaaaaaccttggcgtcacaattgtaattgtggcaattgtggtggtcgaaaaaccttggtgtgatggtgtcacatcatcaagtgtag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28042347 |
taatcgcggtggtcgaaaaaccttggcgtcacaattgtaattgtggcaattgtggtggtcgaaaaaccttggtgtgatggtgtcacatcatcaagtgtag |
28042248 |
T |
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| Q |
318 |
ttgctaacttaatgtaaaatcacactttgcatagttttaaattggggatgcgnnnnnnnnnnngtggctacactgcaaaccttatgtaggtgaaatacag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
28042247 |
ttgctaacttaatgtaaaatcacactttgcatagttttaaattggggatgcg--tttttttttgtggctacactgcaaaccttatgtaggtgaaatgcag |
28042150 |
T |
|
| Q |
418 |
gaaaatgtgtccgatgcagttgaaattgtagttgtgatatcattgcagagacttcaaatccagaatattgtgcggtggaggaccgcaatttataaccatg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28042149 |
gaaaatgtgtccgatgcagttgaaattgtagttgtgatatcattgcagagacttcaaatccagaatattgtgcggtggaggaccgcaatttataaccatg |
28042050 |
T |
|
| Q |
518 |
cttctttgtgc |
528 |
Q |
| |
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||||||||||| |
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| T |
28042049 |
cttctttgtgc |
28042039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 202 - 368
Target Start/End: Complemental strand, 27239612 - 27239452
Alignment:
| Q |
202 |
gattctgccacaattgtaatcgcggtggtcgaaaaaccttggcgtcacaattgtaattgtggcaattgtggtggtcgaaaaaccttggtgtgatggtgtc |
301 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
27239612 |
gattctaccacaattgtaatcgtggtggtcgaaaaaccttggtgccacaattgtaattgtgg---------tggtcaaaaaaccttggtgtgatggtgtc |
27239522 |
T |
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| Q |
302 |
acatcatcaagtgtagttgctaacttaatgtaaaatcaca---ctttgcatagttttaaattggggatgc |
368 |
Q |
| |
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|||||| |||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |
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| T |
27239521 |
acatcaccaagtgtagttgctaacttaatttagaatcacacttctttgcatagttttaaattggggatgc |
27239452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 437 - 528
Target Start/End: Complemental strand, 27239408 - 27239315
Alignment:
| Q |
437 |
ttgaaattgtagttgtgatatcattgcagagactt-caaatccagaatattgtgcggtggaggaccgcaa-tttataaccatgcttctttgtgc |
528 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| |
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| T |
27239408 |
ttgaaattgtagttgtgatttcattgcagagacttaaaaatccagaatattgtatggtgtaggaccgcaattttataaccatgcttctttgtgc |
27239315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 27239674 - 27239612
Alignment:
| Q |
33 |
catttacattccacagtgttttaaaataatgtatagaactacaatttaagttacatcattagg |
95 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||| |||| ||||||||| ||||| |
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| T |
27239674 |
catttacattgcacagtgttttaaaataatgcatagaactacgatttcagttacatctttagg |
27239612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 475
Target Start/End: Original strand, 273599 - 273655
Alignment:
| Q |
419 |
aaaatgtgtccgatgcagttgaaattgtagttgtgatatcattgcagagacttcaaa |
475 |
Q |
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|||||| ||||| ||||||||||||||| ||||||||| |||| ||||||||||| |
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| T |
273599 |
aaaatgcgtccggtgcagttgaaattgtggttgtgatactattgaggagacttcaaa |
273655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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