View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16435_high_7 (Length: 494)
Name: NF16435_high_7
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_high_7 |
 | |
|
| [»] scaffold0119 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 44635807 - 44635337
Alignment:
| Q |
19 |
atgcaacactagagatcgaaagtgatgaatttgattactcaaaaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaac |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44635807 |
atgcaacactagagatcgaaagcgatgaatttgattactcaaaaagatcacaatggctacgtgccgcagttttaggagctaatgatggattagtttcaac |
44635708 |
T |
|
| Q |
119 |
agcatcactaatgatgggtgtaggagcagtgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44635707 |
agcatcactaatgatgggtgtaggagcagtgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggca |
44635608 |
T |
|
| Q |
219 |
ataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaa---------------agaggtaataatattgaagagaaagaaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44635607 |
ataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagagacaatattgaaagaggtaataatattgaagagaaagaaa |
44635508 |
T |
|
| Q |
304 |
gtttgccaaatcctttacaagcagcagcagcttcagctttagcattttcaattggtgcaatggtgccactacttgcagcatctttcattaaagattataa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44635507 |
gtttgccaaatcctttacaagcagcagcagcttcagctttagcattttcaattggtgcaatggtgccactacttgcagcatctttcattaaagattataa |
44635408 |
T |
|
| Q |
404 |
ggtaagggtaggtgttgttttgggagcagttagttttgctttggttgtgtttggttggttgggtgcagtgt |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44635407 |
ggtaagggtaggtgttgttttgggagcagttagttttgctttggttgtgtttggttggttgggtgcagtgt |
44635337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 48 - 279
Target Start/End: Original strand, 12281527 - 12281758
Alignment:
| Q |
48 |
tttgattactcaaaaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcag |
147 |
Q |
| |
|
||||| |||||||||||||||||||||||| | || || |||||||| ||||| ||||||||||| || ||||| || |||||||||||||| || |||| |
|
|
| T |
12281527 |
tttgactactcaaaaagatcacaatggctaagagcagctgttttaggcgctaacgatggattagtctctacagcttcgctaatgatgggtgtcggtgcag |
12281626 |
T |
|
| Q |
148 |
tgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcaca |
247 |
Q |
| |
|
| || |||||||| ||||| |||||||| | |||||||| || | ||||| |||||||| ||||||||||||||||| ||||| ||||| || ||||| |
|
|
| T |
12281627 |
tcaagcaagacatcaaagcaatgatcttaaccggttttgccgggttggtagccggtgcatgcagcatggcaataggtgaatttgtctctgtgtactcaca |
12281726 |
T |
|
| Q |
248 |
acttgacattgaaattgctcaattaaaaagag |
279 |
Q |
| |
|
| | ||||||||| |||||||| | ||||||| |
|
|
| T |
12281727 |
attagacattgaagttgctcaaatgaaaagag |
12281758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 290 - 463
Target Start/End: Original strand, 12281790 - 12281963
Alignment:
| Q |
290 |
tgaagagaaagaaagtttgccaaatcctttacaagcagcagcagcttcagctttagcattttcaattggtgcaatggtgccactacttgcagcatctttc |
389 |
Q |
| |
|
|||||||||||||||||| || |||||| ||||||| ||||| || ||||||||||| ||||| |||||||||||||||||| |||||||||| | ||| |
|
|
| T |
12281790 |
tgaagagaaagaaagtttacctaatcctctacaagctgcagctgcatcagctttagctttttctattggtgcaatggtgccattacttgcagcttttttt |
12281889 |
T |
|
| Q |
390 |
attaaagattataaggtaagggtaggtgttgttttgggagcagttagttttgctttggttgtgtttggttggtt |
463 |
Q |
| |
|
|| | ||||||||||| || || ||||||||| | | |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
12281890 |
ataagggattataaggtgagagttggtgttgttgtagctgcagttagttttgctttgcttgtttttggttggtt |
12281963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 278
Target Start/End: Complemental strand, 13673 - 13456
Alignment:
| Q |
61 |
aaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcagtgaaacaagacat |
160 |
Q |
| |
|
||||| |||||||||| | || || |||||||| ||||||||||| ||| | ||||||||||| |||||||||||||| || || || | | |||| | |
|
|
| T |
13673 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
13574 |
T |
|
| Q |
161 |
aaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaa |
260 |
Q |
| |
|
|| | ||||| | | || ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| |||||| |
|
|
| T |
13573 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaa |
13474 |
T |
|
| Q |
261 |
attgctcaattaaaaaga |
278 |
Q |
| |
|
|||| ||| | |||||| |
|
|
| T |
13473 |
tttgcacaaatgaaaaga |
13456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 278
Target Start/End: Complemental strand, 19353 - 19136
Alignment:
| Q |
61 |
aaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcagtgaaacaagacat |
160 |
Q |
| |
|
||||| |||||||||| | || || |||||||| ||||||||||| ||| | ||||||||||| |||||||||||||| || || || | | |||| | |
|
|
| T |
19353 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
19254 |
T |
|
| Q |
161 |
aaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaa |
260 |
Q |
| |
|
|| | ||||| | | || ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| |||||| |
|
|
| T |
19253 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaa |
19154 |
T |
|
| Q |
261 |
attgctcaattaaaaaga |
278 |
Q |
| |
|
|||| ||| | |||||| |
|
|
| T |
19153 |
tttgcacaaatgaaaaga |
19136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 278
Target Start/End: Original strand, 1292921 - 1293138
Alignment:
| Q |
61 |
aaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcagtgaaacaagacat |
160 |
Q |
| |
|
||||| |||||||||| | || || |||||||| ||||||||||| ||| | ||||||||||| |||||||||||||| || || || | | |||| | |
|
|
| T |
1292921 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
1293020 |
T |
|
| Q |
161 |
aaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaa |
260 |
Q |
| |
|
|| | ||||| | | || ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| |||||| |
|
|
| T |
1293021 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaa |
1293120 |
T |
|
| Q |
261 |
attgctcaattaaaaaga |
278 |
Q |
| |
|
|||| ||| | |||||| |
|
|
| T |
1293121 |
tttgcacaaatgaaaaga |
1293138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 37742354 - 37742438
Alignment:
| Q |
195 |
gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag |
279 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||||||||| | ||| ||||||||| || ||||| ||||||||| |
|
|
| T |
37742354 |
gtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagag |
37742438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 37749424 - 37749508
Alignment:
| Q |
195 |
gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag |
279 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||||||||| | ||| ||||||||| || ||||| ||||||||| |
|
|
| T |
37749424 |
gtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagag |
37749508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 37752364 - 37752280
Alignment:
| Q |
195 |
gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag |
279 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||||||| ||||||||| | ||| ||||||||| || ||||| ||||||||| |
|
|
| T |
37752364 |
gtagcaggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagag |
37752280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 37758230 - 37758154
Alignment:
| Q |
69 |
caatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagc |
145 |
Q |
| |
|
|||||||| || || || || |||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
37758230 |
caatggcttcgcgcagccgtattaggagctaatgatggattagtttctgttgcttcactaatgatgggtgtaggagc |
37758154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University