View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_high_8 (Length: 483)
Name: NF16435_high_8
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 18048086 - 18048543
Alignment:
| Q |
19 |
acttctgggtcaaatttcattgagtgccctggtgttccaatgggttcatgtggtgatacagtacaattctccaagttttgggtgaatttgttttgttaag |
118 |
Q |
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| T |
18048086 |
acttctgggtcaaatttcattgagtgccctggtgttccaatgggttcatgtggtgatacagtacaattctccaagttttgggttaatttgttttgttaag |
18048185 |
T |
|
| Q |
119 |
cagaactt----ggtttaatttgtttagttatcctcgtacagaaataagtatgtcgatatttatgaaaaataaatattgaatccacaagaaatatgaa-t |
213 |
Q |
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| T |
18048186 |
cagaacttaattggtttaatttgtttagttatcttcgtacagaaataagtatgttgatatttatgaaaaataaatattgaattcacaagaaatgcgaaat |
18048285 |
T |
|
| Q |
214 |
agttttgtccattcaaatttttgaaatattctaaatgaaagtttaagaaaagattgttttagacacatattataaaaagagttgaaatatatgaataaaa |
313 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18048286 |
agttttgtccattcatatttttgaaatattctaaatgaaagtttaagaaaagattgttttagacacatattataaaaagagttgaaatatatgaataaaa |
18048385 |
T |
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| Q |
314 |
agttgtgttgagatcaggcgtcattaactattcattcaatgattctcttaattgattatagactttttaaattttagttatgtttccacttgtcccctgt |
413 |
Q |
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| T |
18048386 |
agttgtgttgggattaggcatcattagctattcattcaatgcttctcctgattgattataaatttttttaattttagttatgtttccacttgttccttgt |
18048485 |
T |
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| Q |
414 |
tgtcgttactatgtctgccaaatgccacgcgatctgttctatcaattaacttttgatg |
471 |
Q |
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| T |
18048486 |
tgtcgttaccatgtctgtcaaacgccacgagatccattctatcaattaacttttgatg |
18048543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 18035760 - 18035882
Alignment:
| Q |
16 |
gacacttctgggtcaaatttcattgagtgccctggtgttccaatgggttcatgtggtgatacagtacaattctccaagttttgggtgaatttgttttgtt |
115 |
Q |
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|||| |||||||||||| |||||||||||||||||| ||||||||||| |||| | || ||||||||| ||||||||| | |||||||||||||| |
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| T |
18035760 |
gacatttctgggtcaaaattcattgagtgccctggtcttccaatgggtagctgtgacgctaatgtacaattccccaagttttaagagaatttgttttgtt |
18035859 |
T |
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| Q |
116 |
aagcagaacttggtttaatttgt |
138 |
Q |
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||| ||||| |||||| |||||| |
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| T |
18035860 |
aagtagaacatggtttgatttgt |
18035882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 18029737 - 18029859
Alignment:
| Q |
16 |
gacacttctgggtcaaatttcattgagtgccctggtgttccaatgggttcatgtggtgatacagtacaattctccaagttttgggtgaatttgttttgtt |
115 |
Q |
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||||||||||||||||||||||||||||| ||| |||||| | || ||||||||| | | |||||| |||| |||| | |||||| ||||||| |
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| T |
18029737 |
gacacttctgggtcaaatttcattgagtgtcctttgcttccaaggagtagatgtggtgaacaaattcaattccccaaattttaagagaatttattttgtt |
18029836 |
T |
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| Q |
116 |
aagcagaacttggtttaatttgt |
138 |
Q |
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|| ||||| ||||||||||||| |
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| T |
18029837 |
aaagagaacatggtttaatttgt |
18029859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 233 - 354
Target Start/End: Original strand, 30290075 - 30290197
Alignment:
| Q |
233 |
tttgaaatattctaaatgaaagtttaagaaaagattgttttagacacatattataaaaagagtt-gaaatatatgaataaaaagttgtgttgagatcagg |
331 |
Q |
| |
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|||| |||||||||||| || |||||||||||| ||||||||| ||||| | ||||||||||| |||||||| ||||||||||| || || ||| | |
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| T |
30290075 |
tttgcaatattctaaatcaacgtttaagaaaaggttgttttagtaacatactgtaaaaagagttcaaaatatataaataaaaagttatgatgggattata |
30290174 |
T |
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| Q |
332 |
cgtcattaactattcattcaatg |
354 |
Q |
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| T |
30290175 |
catcattacctaatcattcaatg |
30290197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 402
Target Start/End: Original strand, 31222760 - 31222867
Alignment:
| Q |
296 |
tgaaatatatgaataaaaagttgtgttgagatcaggcgtcattaactattcattcaatg-attctcttaattgattatagactttttaaattttagttat |
394 |
Q |
| |
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||||||| |||||||||||||||||||| ||| | |||| ||| || |||||||||| | ||||||||| ||||| ||||| || ||||||||||| |
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| T |
31222760 |
tgaaataaatgaataaaaagttgtgttgggattaaacgtcgttagataatcattcaatgaactctcttaatcgattacttactttctatattttagttat |
31222859 |
T |
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| Q |
395 |
gtttccac |
402 |
Q |
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| T |
31222860 |
gtttccac |
31222867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 18374435 - 18374495
Alignment:
| Q |
240 |
tattctaaatgaaagtttaagaaaagattgttttagacacatattataaaaagagttgaaa |
300 |
Q |
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|||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||||| |
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| T |
18374435 |
tattctaaatctaagtttaagaaaaagttgttttaataacatattgtaaaaagagttgaaa |
18374495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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