View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16435_low_1 (Length: 705)
Name: NF16435_low_1
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 622; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 20 - 699
Target Start/End: Original strand, 3206763 - 3207441
Alignment:
| Q |
20 |
tggatgtcatttttgttgataccattagaattgtcgatgcaaaatatatctaatgaggaaaagatagtgacttattggggaaatcaccattttacattgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3206763 |
tggatgtcatttttgttgataccattagaattgtcgatgcaaaatatatctaatgaggaaaagatagtgacttattggggaaatcaccattttacattgt |
3206862 |
T |
|
| Q |
120 |
tgtctattataaaatgtgcacaatatagtcatttacgaaaacaagtggtacatgcaaaataataatctaagttaaaaaattccattgttaaatagctttt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3206863 |
tgtctattataaaatgtgcacaatatagtcatttacgaaaacaagtggtacatgcaaaataataatctaagttaaaaaactccattgttaaatagctttt |
3206962 |
T |
|
| Q |
220 |
aacttgaagcaagaatatatattatacttcggaaacatgctatgtatagaggaatattgaaacaagaaaattggtaacccagtttaatgnnnnnnnnnnc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3206963 |
aacttgaagcaagaatatatattatacttcggaaacatgctatgtatagaggaatattgaaacaagaaaattggtaacccagtttaatgtattttttttc |
3207062 |
T |
|
| Q |
320 |
cttcttctaatgcaccctttattacttgataaaattcatattactatcatttgaaagaagattatgaaataagattacttaagactcataatttcataag |
419 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3207063 |
-ttcttctaatgcaccctttattatttgataaaattcatattactatcatttgaaagaagattatgaaataagattacttaagactcataatttcataag |
3207161 |
T |
|
| Q |
420 |
agaaatggacttaaaattaacgtctaagaaattaaataagctccaagtttcaaacacatgtttgcaaactttttagttcctatatttattccttaataaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3207162 |
agaaatggacttaaaattaacgtctaagaaattaaataagctccaagtttcaaacacatgtttgcaaactttttagttcctatatttattccttaataaa |
3207261 |
T |
|
| Q |
520 |
aagtcatgatataattaatttactgtgccaacatactcaaagacaacagcaataggaatgctaacagaatactttgcagaaacccatttgatagagcctt |
619 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3207262 |
aagtcatgctataattaatttaccgtgccaacatactcaaagacaacagcaataggaatgctaacagaatactttgcagaaacccatttgatagagcctt |
3207361 |
T |
|
| Q |
620 |
gagcaataaagttatcacctctattctctttatcttcgggtataaaatcaacccaatatgttaccttttgcttcatctca |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3207362 |
gagcaataaagttatcacctctattctctttatcttcaggtataaaatcaacccaatatgttaccttttgcttcatctca |
3207441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 480 - 694
Target Start/End: Original strand, 3201242 - 3201462
Alignment:
| Q |
480 |
tttgcaaactttttagttcctatatttattccttaa--taaaaa-gtcatgatataattaatttactgtgccaacat----actcaaagacaacagcaat |
572 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||| || |||||| | ||||||||||| | ||||| ||| || |||| || |||||||| |
|
|
| T |
3201242 |
tttgcaaactttttatttcctatatttattccttaacataataatgtcatgctctaattaatttattttgcca-cattttcacacaaatacgacagcaat |
3201340 |
T |
|
| Q |
573 |
aggaatgctaacagaatactttgcagaaacccatttgatagagccttgagcaataaagttatcacctctattctctttatcttcgggtataaaatcaacc |
672 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
3201341 |
aggaatgctaacagaatactttgcagaaatccacttgatagatccttgagcaataaagttatcacctctattctctttgtcttcaggtataaaatcaacc |
3201440 |
T |
|
| Q |
673 |
caatatgttaccttttgcttca |
694 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3201441 |
caatatgttaccttttgcttca |
3201462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 3200850 - 3200897
Alignment:
| Q |
87 |
tgacttattggggaaatcaccattttacattgttgtctattataaaat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3200850 |
tgacttattggggaaatcaccattttacattgttgtctattataaaat |
3200897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 699
Target Start/End: Original strand, 3215249 - 3215377
Alignment:
| Q |
571 |
ataggaatgctaacagaatactttgcagaaacccatttgatagagccttgagcaataaagttatcacctctattctctttatcttcgggtataaaatcaa |
670 |
Q |
| |
|
||||| || ||||| | ||||||| |||||||||| |||||||| || |||| ||| ||||||||||||||| || | | ||||||| ||||| ||| |
|
|
| T |
3215249 |
atagggattctaacggtatactttccagaaacccacttgatagatccctgagaaatttccttatcacctctattcactatgttttcgggtgtaaaagcaa |
3215348 |
T |
|
| Q |
671 |
cccaatatgttaccttttgcttcatctca |
699 |
Q |
| |
|
|| | ||||| || ||||||||| ||||| |
|
|
| T |
3215349 |
ccgagtatgtaactttttgcttcttctca |
3215377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University