View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_low_11 (Length: 483)
Name: NF16435_low_11
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 22 - 470
Target Start/End: Complemental strand, 47386515 - 47386047
Alignment:
| Q |
22 |
attcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactcgc----ttagtgtttcactattctgctgctacatctgtatcgtatcactg |
117 |
Q |
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| T |
47386515 |
attcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactcaccgagtgagtgtttcactattctgctgctacatctgtatcgtatcactg |
47386416 |
T |
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| Q |
118 |
cgctgctcgtgtgtccttcttggaacaaa-----gtaacgataataactaccgacaagactatagtttatgagacaaacacgggaaattcattaaacaaa |
212 |
Q |
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| T |
47386415 |
cgctgctcgtgtgtccttcttggaacaaattaaagtaacgataataactaccgacaagactatagtttatgatacaaacacgggaaattcattaaacaaa |
47386316 |
T |
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| Q |
213 |
acaagatgaatgcacgcacaaaaa---------tatttaaatcttgtatttt--attaatacatatataaatagaactgaaaatataaatagttttagga |
301 |
Q |
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| T |
47386315 |
acaagatgaatgcacgcacaaaaaggacaaaaatatttaaatcttgtattttttattaatacatatataaatagaactgaaaatataaatagttttagga |
47386216 |
T |
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| Q |
302 |
agtagtagccactgccacccaaagggcttcaccccaatttaaaaattctttgttttcattttcaccaccttctttgcaccttcttgcccactcatacttt |
401 |
Q |
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| T |
47386215 |
agtagtagccactgccacccaaagggattcaccccaatttaaaaattctttgttttcattttcaccaccttctttgcaccttcttgcccactcatacttt |
47386116 |
T |
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| Q |
402 |
tccattcttgcgtcactacttttcatcttctcacatgcaacaacttcttctagttccaccttctctgct |
470 |
Q |
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| T |
47386115 |
tccattcttgcgtcactacttttcatcttctcacatgcaacaacttcctctagttccaccttctctgct |
47386047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 378
Target Start/End: Original strand, 47372630 - 47372820
Alignment:
| Q |
187 |
caaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaatattta-aatcttgtattttattaatacatatataaatagaactgaaaat |
285 |
Q |
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|||||||||||||||||||||||||| || | ||||||||| | ||| | || | |||||||| ||||||||||||| ||| |||||| |||||| |
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| T |
47372630 |
caaacacgggaaattcattaaacaaagcaggttgaatgcacaaaaaaacaaatacataatcttgttttttattaatacagata--aatagatgggaaaat |
47372727 |
T |
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| Q |
286 |
ataaatagttttaggaagtagtagccactgccacccaaag-----ggcttcaccccaatttaaaaattctttgttttcattttcaccaccttctttgc |
378 |
Q |
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| T |
47372728 |
ataaatagttttaggaagtagtagccac-----ccaaaagttcacgttctcaccccaatttaacgattcattgttttcattttcaccaccttctttgc |
47372820 |
T |
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