View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16435_low_12 (Length: 479)

Name: NF16435_low_12
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16435_low_12
NF16435_low_12
[»] chr6 (8 HSPs)
chr6 (11-466)||(20205197-20205652)
chr6 (11-466)||(22099220-22099675)
chr6 (25-466)||(21971772-21972216)
chr6 (24-444)||(20085890-20086310)
chr6 (25-444)||(22204853-22205272)
chr6 (25-442)||(24385068-24385484)
chr6 (24-437)||(20237803-20238216)
chr6 (24-437)||(22131787-22132200)
[»] scaffold0264 (1 HSPs)
scaffold0264 (25-466)||(15841-16281)
[»] scaffold0007 (1 HSPs)
scaffold0007 (25-448)||(5199-5625)
[»] scaffold0074 (1 HSPs)
scaffold0074 (25-466)||(47660-48098)


Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 11 - 466
Target Start/End: Original strand, 20205197 - 20205652
Alignment:
Q  11 cacagagtctagaaggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20205197 cacagagtctagaaggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcga 20205296  T
Q  111 caacaaataagacagaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagttta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20205297 caacaaataagacagaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagttta 20205396  T
Q  211 gaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20205397 gaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagc 20205496  T
Q  311 taggataaagaaatctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacagtttctgcaatcattaggcgacaaatc 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20205497 taggataaagaaatctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacaggttctgcaatcattaggcgacaaatc 20205596  T
Q  411 cggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgcttctt 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20205597 cggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgcttctt 20205652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 11 - 466
Target Start/End: Original strand, 22099220 - 22099675
Alignment:
Q  11 cacagagtctagaaggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22099220 cacagagtctagaaggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcga 22099319  T
Q  111 caacaaataagacagaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagttta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22099320 caacaaataagacagaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagttta 22099419  T
Q  211 gaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22099420 gaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagc 22099519  T
Q  311 taggataaagaaatctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacagtttctgcaatcattaggcgacaaatc 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22099520 taggataaagaaatctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacaggttctgcaatcattaggcgacaaatc 22099619  T
Q  411 cggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgcttctt 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22099620 cggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgcttctt 22099675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 25 - 466
Target Start/End: Original strand, 21971772 - 21972216
Alignment:
Q  25 ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca 124  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||    
T  21971772 ggaagatcacctcgacacatgaagagaccatacgcaatttcttccactttaagccaataaaattttttgccgatggtggcgttcgacaacaaataagaca 21971871  T
Q  125 gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagt---ttagaatcttgttt 221  Q
    |||||| |||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||  ||||||||||||   |||||||||||| |    
T  21971872 gaagtagtttgatgtttttgtcagtgattgtattgtaatttcttgagcaattataggaaagataaaatggatcttctgaaagtattttagaatcttgtat 21971971  T
Q  222 ggaatcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaaga 321  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||  | ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21971972 ggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggatataattcatacctaacattacagctaggataaaga 21972071  T
Q  322 aatctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcact 421  Q
    |||||||| || ||||||||| |||| || | ||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||    
T  21972072 aatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggttctgcaatcattaggcgacaaatccagcgtgcact 21972171  T
Q  422 gagctagacagtaaagggtctgattttccgaatcttgtgcttctt 466  Q
    ||||||||| |||||||||||||||||||||| || |||||||||    
T  21972172 gagctagactgtaaagggtctgattttccgaaactcgtgcttctt 21972216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 444
Target Start/End: Original strand, 20085890 - 20086310
Alignment:
Q  24 aggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagac 123  Q
    |||||| ||||||||||||| |||||| || ||||| ||||| ||||||||||   ||| |||||||| |||  | |||||||| ||  ||| ||||||     
T  20085890 aggaaggtcacctcgacacaagaagaggccgtacaccatttcatccactttaacagtataaaatttttcgccatttgtggcgttggaggacagataagag 20085989  T
Q  124 agaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgg 223  Q
    ||||||||||||| ||| |||| |||||||||  ||| ||||||||||||||||||||||||||||| ||  |||| ||||| | |||||||||| || |    
T  20085990 agaagtaatttgaagttattgttagtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaatctagaatcttggtttg 20086089  T
Q  224 aatcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaa 323  Q
    ||| ||||||| ||||| | ||||||||||| ||| || || |||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||     
T  20086090 aatgatttgtttgaggaacaagctcatttggcgaaggagcattaatagacctataaaaaggatataattcatacctaacattacagctaggaaaaagaac 20086189  T
Q  324 tctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactga 423  Q
    |||||| |||||||||||||||||||   | | || |||||||||||||||| |||||||| |||||||||||   || ||||| |||||||||||||||    
T  20086190 tctcccacccacctttccatcacaacagctaggaagtttctcaatagcactattgagacaggttctgcaatcaccgggtgacaagtccggcgtgcactga 20086289  T
Q  424 gctagacagtaaagggtctga 444  Q
    |||||||||||||||||||||    
T  20086290 gctagacagtaaagggtctga 20086310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 25 - 444
Target Start/End: Complemental strand, 22205272 - 22204853
Alignment:
Q  25 ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca 124  Q
    ||||| |||||||||||||||||||| || ||||| |||||||||||||| |   | || || |||  |||  | |||||||| ||  |||||||||| |    
T  22205272 ggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttactttttggaaatttccgccatttgtggcgttggaggacaaataagaga 22205173  T
Q  125 gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga 224  Q
    |||||||||||| |||||||| ||||||| |  ||||||||||||||||||||||||||||||||||||  |||| ||||| | ||||||||||  | ||    
T  22205172 gaagtaatttgaagtttttgttagtgattttactgtggtttcttgagcaattataggaaagataaaatggatcttgtgaaaatctagaatcttgggttga 22205073  T
Q  225 atcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaat 324  Q
    || ||||||| ||||| | ||||||||||||||| || || |||||||||||||||| ||||||| ||||||||| | ||||||||||||| ||| || |    
T  22205072 atgatttgtttgaggaacaagctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaacaact 22204973  T
Q  325 ctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgag 424  Q
    ||| | |||||||||||||||||||   | | || || ||||||||||||| | |||||| |||||||||||   || ||||| ||||||||||||||||    
T  22204972 ctcgcacccacctttccatcacaacagctaggaagttcctcaatagcactattaagacaggttctgcaatcaccgggtgacaagtccggcgtgcactgag 22204873  T
Q  425 ctagacagtaaagggtctga 444  Q
    |||| |||||||||||||||    
T  22204872 ctaggcagtaaagggtctga 22204853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 25 - 442
Target Start/End: Complemental strand, 24385484 - 24385068
Alignment:
Q  25 ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca 124  Q
    ||||| |||||||||||||||||||| || ||||| |||||||||||||| |   |||  |||||||||||  | |||||||| ||  ||| |||||| |    
T  24385484 ggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttacagtatagaattttttgccatttgtggcgttggaggacagataagaga 24385385  T
Q  125 gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga 224  Q
    |||||||||||| ||| | ||  |||||| | |||||||||||||||||||||||||||||||||| ||  |||| ||||| | ||||||||||||| ||    
T  24385384 gaagtaatttgaagttatcgtttgtgattatattgtggtttcttgagcaattataggaaagataaattggatcttgtgaaaatctagaatcttgttttga 24385285  T
Q  225 atcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaat 324  Q
    |||||||||| ||||| | |||||||||| |||| || || |||||||  ||||||| ||| ||| ||||||||| |  |||||||||||| || ||| |    
T  24385284 atcatttgtttgaggaacaagctcatttgatgaaggagcaataatagatttataaaaaggaaatagttcatacctaatgttacagctaggaaaaggaact 24385185  T
Q  325 ctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgag 424  Q
    || || |||  ||||||||||||||    || ||     |||||||||||| |||||||| |||||||||||||||| ||||| || |||||||||||||    
T  24385184 ct-ccaccctgctttccatcacaacatagtggaagagattcaatagcactattgagacaggttctgcaatcattaggggacaagtctggcgtgcactgag 24385086  T
Q  425 ctagacagtaaagggtct 442  Q
    ||| | ||||||| ||||    
T  24385085 ctaaatagtaaagcgtct 24385068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 24 - 437
Target Start/End: Original strand, 20237803 - 20238216
Alignment:
Q  24 aggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagac 123  Q
    |||||| ||||||||||||| |||||| || |||||  ||||||||||||||    |||| ||| || ||||  | |||||||| ||  ||||||||||     
T  20237803 aggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaataagag 20237902  T
Q  124 agaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgg 223  Q
    ||||||||||||| |||||||| |||||||||  |||||||||||| |||||||| ||||||||||| ||  |||| || ||  |||||||||||||| |    
T  20237903 agaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttg 20238002  T
Q  224 aatcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaa 323  Q
    ||||||||||| ||||| | ||||||||| ||||| || || || |||| |||||||| |||||||  |||||||| | |||||| |||||||| | |      
T  20238003 aatcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaatt 20238102  T
Q  324 tctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactga 423  Q
    |||||| |||  |||||||||| |    ||||||| ||||  |||||||| || ||| ||| |||||||||||||   |||||| || ||||||||||||    
T  20238103 tctcccaccctgctttccatcatacacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactga 20238202  T
Q  424 gctagacagtaaag 437  Q
    ||||||||||||||    
T  20238203 gctagacagtaaag 20238216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 24 - 437
Target Start/End: Original strand, 22131787 - 22132200
Alignment:
Q  24 aggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagac 123  Q
    |||||| ||||||||||||| |||||| || |||||  ||||||||||||||    |||| ||| || ||||  | |||||||| ||  ||||||||||     
T  22131787 aggaaggtcacctcgacacaagaagaggccgtacaccttttcttccactttagcaatatggaatgttgtgccatttgtggcgttggaagacaaataagag 22131886  T
Q  124 agaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgg 223  Q
    ||||||||||||| |||||||| |||||||||  |||||||||||| |||||||| ||||||||||| ||  |||| || ||  |||||||||||||| |    
T  22131887 agaagtaatttgaagtttttgttagtgattgtactgtggtttcttgggcaattatcggaaagataaactggatcttgtgtaaaattagaatcttgttttg 22131986  T
Q  224 aatcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaa 323  Q
    ||||||||||| ||||| | ||||||||| ||||| || || || |||| |||||||| |||||||  |||||||| | |||||| |||||||| | |      
T  22131987 aatcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattacaactaggatataaatt 22132086  T
Q  324 tctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactga 423  Q
    |||||| |||  |||||||||| |    ||||||| ||||  |||||||| || ||| ||| |||||||||||||   |||||| || ||||||||||||    
T  22132087 tctcccaccctgctttccatcatacacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaagtctggcgtgcactga 22132186  T
Q  424 gctagacagtaaag 437  Q
    ||||||||||||||    
T  22132187 gctagacagtaaag 22132200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 25 - 466
Target Start/End: Original strand, 15841 - 16281
Alignment:
Q  25 ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca 124  Q
    ||||| |||||||||||||||||||| || ||||| |||||||||||||| |   | || || ||| |||| || |||||||| ||  ||| |||||| |    
T  15841 ggaaggtcacctcgacacatgaagaggccgtacaccatttcttccacttttactttttggaaatttctgcc-attgtggcgttggaggacagataagaga 15939  T
Q  125 gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga 224  Q
    |||||||||||| ||| |||| |||||||||  ||| ||||||||||||||||||||||||||||| ||  |||| ||||| | |||||||||| || ||    
T  15940 gaagtaatttgaagttattgttagtgattgtactgttgtttcttgagcaattataggaaagataaattggatcttgtgaaaatctagaatcttggtttga 16039  T
Q  225 atcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaat 324  Q
    || ||||||| ||||| | ||||||||||| ||| || || |||||||||||||||| ||||||| ||||||||| ||||||||||||||  ||||||||    
T  16040 atgatttgtttgaggaacaagctcatttggcgaaggagcattaatagacctataaaaaggatatagttcatacctaacattacagctaggcaaaagaaat 16139  T
Q  325 ctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgag 424  Q
    ||||| ||||||||||||| || || |   | ||     ||||||||| ||  ||||||| |||||||||  ||||| ||||| || |||||||||||||    
T  16140 ctcccacccacctttccataaccacacagaggaagaagatcaatagcagtatagagacaggttctgcaattgttaggagacaagtctggcgtgcactgag 16239  T
Q  425 ctagacagtaaagggtctgattttccgaatcttgtgcttctt 466  Q
    |||||||||| ||||||||||||| |||| || |||||||||    
T  16240 ctagacagtatagggtctgatttttcgaaactcgtgcttctt 16281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 25 - 448
Target Start/End: Complemental strand, 5625 - 5199
Alignment:
Q  25 ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca 124  Q
    ||||| |||||||||||||||||||| |||||||   |||||||||||||||   ||||  |||||| |||  | |||||||| ||  |||||||||| |    
T  5625 ggaaggtcacctcgacacatgaagaggccatacagcgtttcttccactttaacagtatgggatttttcgccatttgtggcgttggaggacaaataagaga 5526  T
Q  125 gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga 224  Q
    |||||||||||| |||||| | |||||||||  | |||||||||||||||||||||||||||||||| |  |||| ||||| | ||| ||||||||| ||    
T  5525 gaagtaatttgaagtttttcttagtgattgtactttggtttcttgagcaattataggaaagataaaagggatcttttgaaaatctagtatcttgttttga 5426  T
Q  225 atcatttgttcgaggagctagctcatttggtgaaagaacagta---atagacctataaaatggatataattcataccttacattacagctaggataaaga 321  Q
    ||  |||||| ||||| | |||||||||||||||  |  ||||   |||||||||||||| ||||||| ||||||||| | ||||||||||||| ||| |    
T  5425 atagtttgtttgaggaacaagctcatttggtgaagaagtagtattgatagacctataaaaaggatatagttcatacctaatattacagctaggaaaaaca 5326  T
Q  322 aatctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcact 421  Q
    | |||||| ||| ||||||||||||||  | | | ||  |  |||||||| |||  ||||||| |||||||||  ||||| ||||| |||||||||||||    
T  5325 actctcccaccctcctttccatcacaaaccataggaagatattcaatagctctatggagacaggttctgcaattgttaggggacaagtccggcgtgcact 5226  T
Q  422 gagctagacagtaaagggtctgatttt 448  Q
    |  |||||||||| |||||||||||||    
T  5225 gttctagacagtacagggtctgatttt 5199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 25 - 466
Target Start/End: Complemental strand, 48098 - 47660
Alignment:
Q  25 ggaagatcacctcgacacatgaagagaccatacacaatttcttccactttaaggctatgaaattttttgccgatggtggcgttcgacaacaaataagaca 124  Q
    ||||| |||||||||||||||||||| |||||||  ||||||||||||||||   ||||  |||||| |||  | |||||||| ||  |||||||||| |    
T  48098 ggaaggtcacctcgacacatgaagaggccatacagcatttcttccactttaacagtatgggatttttcgccatttgtggcgttggaggacaaataagaga 47999  T
Q  125 gaagtaatttgatgtttttgtcagtgattgtgttgtggtttcttgagcaattataggaaagataaaatgattcttctgaaagtttagaatcttgtttgga 224  Q
    |||||||||||| |||||| | |||||||||  |||||||||||| |||||||||||||||||||| ||  |||| ||||| | ||||||||||||| ||    
T  47998 gaagtaatttgaagtttttcttagtgattgtactgtggtttcttgggcaattataggaaagataaattggatcttgtgaaaatctagaatcttgttttga 47899  T
Q  225 atcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacattacagctaggataaagaaat 324  Q
    ||  |||||| ||||| | ||||||||||||||   |  | | |||||||||||||| ||||||| ||||||||| ||||||||||||||| ||| ||      
T  47898 atgttttgtttgaggaacaagctcatttggtga---agtattgatagacctataaaaaggatatagttcatacctaacattacagctaggaaaaaaaacc 47802  T
Q  325 ctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacagtttctgcaatcattaggcgacaaatccggcgtgcactgag 424  Q
     |||| |||  |||||||||| ||  ||  | ||     ||||||||| ||  ||||||| |||||||||  ||||| ||||| || |||||||||||||    
T  47801 atcccaccctgctttccatcaaaaagctgagcaagaaaatcaatagcagtatagagacaggttctgcaattgttaggagacaagtctggcgtgcactgag 47702  T
Q  425 ctagacagtaaagggtctgattttccgaatcttgtgcttctt 466  Q
    ||||||||||||||||||| |||| |||| || |||||||||    
T  47701 ctagacagtaaagggtctgttttttcgaaactcgtgcttctt 47660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University