View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16435_low_15 (Length: 411)

Name: NF16435_low_15
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16435_low_15
NF16435_low_15
[»] chr6 (3 HSPs)
chr6 (20-379)||(22696792-22697145)
chr6 (110-311)||(34501227-34501420)
chr6 (32-119)||(34502703-34502788)
[»] chr4 (2 HSPs)
chr4 (30-389)||(12888503-12888858)
chr4 (72-146)||(46879476-46879551)
[»] chr2 (1 HSPs)
chr2 (24-364)||(36593154-36593488)
[»] chr3 (1 HSPs)
chr3 (20-364)||(49358804-49359145)
[»] chr8 (3 HSPs)
chr8 (26-364)||(38148998-38149331)
chr8 (20-364)||(32918994-32919331)
chr8 (20-311)||(20519249-20519534)
[»] chr7 (3 HSPs)
chr7 (20-385)||(36934489-36934851)
chr7 (148-362)||(5888717-5888932)
chr7 (31-146)||(5892657-5892772)
[»] chr5 (5 HSPs)
chr5 (113-306)||(27631785-27631977)
chr5 (21-133)||(36607593-36607706)
chr5 (43-99)||(27631962-27632018)
chr5 (148-193)||(36607544-36607590)
chr5 (183-223)||(21580697-21580737)
[»] chr1 (1 HSPs)
chr1 (21-156)||(32946613-32946746)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 22696792 - 22697145
Alignment:
Q  20 gccacacccctgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaac 119  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||| ||||| |||||||||    
T  22696792 gccacacccccaaactcaccaccacacaagaaagagacagtgaacatttcgcctcccagctaaacaccaacaaccaccacttgtgataccgatcaccaac 22696891  T
Q  120 aaccatcaaaatcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcaccttagacagc 219  Q
    ||||||||      ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||  |||||||    
T  22696892 aaccatca------ccatcaactcaataatccatgaccttagatctgagatcaccacacgtagactgcatcaccgccacttggacatcacccaagacagc 22696985  T
Q  220 agcaccgctccctgcatcacttccattcgaaacttcaccaaaaacagtagcacaataaacaacaccatcactctaacatcaccaacctaaacgtctccct 319  Q
    | ||| ||||||| |||||| ||||||| |||||||||||||||||||||| || |||||||||||| ||||  |||||||||| || ||||||||||||    
T  22696986 aacactgctccctacatcacctccattcaaaacttcaccaaaaacagtagctcactaaacaacaccaccacttcaacatcaccagccgaaacgtctccct 22697085  T
Q  320 tactcaccaattcgaaaacaacgcagatccagatctggatatggtaacagattcaaatcc 379  Q
    |  ||| |||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  22697086 tggtcatcaattcaaaaacaacgcagatccagatccggatatggttacaaattcaaatcc 22697145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 110 - 311
Target Start/End: Complemental strand, 34501420 - 34501227
Alignment:
Q  110 catcaccaacaaccatcaaaatcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcac 209  Q
    |||||||||||||||  ||||||||||||||||||||  |||||||||||| |||       ||||||||||||||||||||| ||||||||||||||||    
T  34501420 catcaccaacaaccactaaaatcaccatcaactcaatataccatgaccttatatc-------accacacgcagactgcatcactaccacttggacatcac 34501328  T
Q  210 cttagacagcagcaccgctccctgcatcacttccattcgaaacttcaccaaaaacagtagcacaataaacaacaccatcactctaacatcaccaacctaa 309  Q
    |  |||||||| |||| |||||  |||||| ||||||||||||||||||||||| ||||||||| | |||||||||| ||||| ||||||||||||| ||    
T  34501327 ccaagacagcaacaccactcccaacatcacctccattcgaaacttcaccaaaaatagtagcacact-aacaacaccaccactccaacatcaccaaccgaa 34501229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 34502788 - 34502703
Alignment:
Q  32 aactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaac 119  Q
    |||||||||||||| |||||||||||||| |||  ||||||||||||||||||| ||| |||||||| |||| |||| ||| ||||||    
T  34502788 aactcaccaccacagaagaaagagacagtaaac--ttcgcctcccaactcaacagcaacaaccaccacttgtgatactcattaccaac 34502703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 30 - 389
Target Start/End: Original strand, 12888503 - 12888858
Alignment:
Q  30 tgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccatcaaa 129  Q
    |||||||||||| |||||||||||||||||| |||  ||||||||||||||||||||||| ||||||||  ||| |||||||||||||||||||| ||||    
T  12888503 tgaactcaccac-acacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaacaaccaccacctgtgatacccatcaccaacaaccaccaaa 12888599  T
Q  130 atcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcaccttagacagcagcaccgctc 229  Q
    || |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||    
T  12888600 attaccatcaactcaataaaccatgaccttagatttgagatcaccacacgcagactgcatcaccaccacttggacatcacctaagacagcaacaccactc 12888699  T
Q  230 cctgcatcacttccattcgaaacttcaccaaaaacagtagcacaataaacaacaccatcactctaacatcaccaacctaaacgtctcccttactcaccaa 329  Q
    |||||||||| |||||| ||||||||||||||||||| ||||| || ||||||| || ||||  ||||||||||||| |||| ||||||||  | |||||    
T  12888700 cctgcatcacctccatttgaaacttcaccaaaaacagcagcac-attaacaacaacaccactacaacatcaccaaccgaaacatctcccttgattaccaa 12888798  T
Q  330 ttc-gaaaacaacgcagatccagatctggatatggtaacagattcaaatccggattcgcat 389  Q
    |||  |||| |||  | ||||||||| |||||||||  | |||||| ||||||||| ||||    
T  12888799 ttcaaaaaataacata-atccagatccggatatggttgcggattcagatccggatttgcat 12888858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 46879551 - 46879476
Alignment:
Q  72 ctcccaactcaacaccaaaaaccacca-attgtaatacccatcaccaacaaccatcaaaatcaccatcaactcaat 146  Q
    |||||||||||||||||| ||||||||  |||  ||||||||||| ||||| ||  ||||||||||| ||||||||    
T  46879551 ctcccaactcaacaccaacaaccaccatcttgagatacccatcacaaacaatcactaaaatcaccattaactcaat 46879476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 24 - 364
Target Start/End: Original strand, 36593154 - 36593488
Alignment:
Q  24 cacccctgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaacc 123  Q
    |||||| |||||| ||||| ||||||||||||||||| |||  |||||||||||||||||||||||   |||||| |||| ||||||||||| |||||||    
T  36593154 cacccccgaactccccacc-cacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaa---ccaccacttgtgatacccatcacaaacaacc 36593247  T
Q  124 atcaaaatcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcaccttagacagcagca 223  Q
    | |||||| |||||||||||||| | |||||||||||||||||||||||||| || |||||| |||||||||||||||||||||| |  | |||||| ||    
T  36593248 accaaaataaccatcaactcaataatccatgaccttagatctgagatcaccaaacacagactacatcaccaccacttggacatcatccaaaacagcaaca 36593347  T
Q  224 ccgctccctgcatcacttccattcgaaacttcaccaaaaacagtagcacaataaacaacaccatcactctaacatcaccaacctaaacgtctcccttact 323  Q
    || ||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||| | ||||||||||||||||||| |||| ||||||||  |    
T  36593348 ccactccctgcatcacctccattcgaaacttcacaaaaaacagtagcacact-aacaacactaccactctaacatcaccaaccgaaacatctcccttggt 36593446  T
Q  324 caccaattc-gaaaacaacgcagatccagatctggatatggt 364  Q
      |||||||  ||||||||||||||||||||| |||||||||    
T  36593447 tgccaattcataaaacaacgcagatccagatccggatatggt 36593488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 49358804 - 49359145
Alignment:
Q  20 gccacacccctgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaac 119  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||    
T  49358804 gccacacccctgaactcaccgccacacaagaaagagacagtgaacatttcgccttccacctcaacaccaaaaaccaccacttgtgatacccatcaccaac 49358903  T
Q  120 aaccatcaaaatcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcaccttagacagc 219  Q
    ||||| |||||||||||| |||| ||| |||||| ||||||||||||| ||||||||||||| |||||||   ||||||||||||||||||  ||||||     
T  49358904 aaccaccaaaatcaccatgaacttaataaaccataaccttagatctgatatcaccacacgcaaactgcat---caccacttggacatcacccaagacagg 49359000  T
Q  220 agcaccgctccctgcatcacttccattcgaaacttcaccaaaaacagtagcacaataaacaacaccatcactctaacatcaccaacctaaacgtctccct 319  Q
    |  |||  ||||| |||||| | |||||||||||||||||||||||  | |||| | |||||||||| ||||| ||||||||||||  |||| |||||||    
T  49359001 aagaccattccctacatcaccttcattcgaaacttcaccaaaaacaacatcacact-aacaacaccaacactccaacatcaccaacagaaacatctccct 49359099  T
Q  320 tactcaccaattc-gaaaacaacgcagatccagatctggatatggt 364  Q
    |  || |||| ||  ||||||| | ||||||||||| | |||||||    
T  49359100 tggtcgccaaatcaaaaaacaatgtagatccagatccgaatatggt 49359145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 26 - 364
Target Start/End: Complemental strand, 38149331 - 38148998
Alignment:
Q  26 cccctgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccat 125  Q
    |||| |||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||   |||||| |||| |||| |||||||||||||||     
T  38149331 cccccgaactcaccaccacacaagaaagagacaataaac--ttcgcctcccaactcaacaccaa---ccaccacttgtgatactcatcaccaacaaccac 38149237  T
Q  126 caaaatcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcaccttagacagcagcacc 225  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||   |||||| |  | |||| ||||||    
T  38149236 caaaataaccatcaactcaataaaccatgaccttagatctgagatcaccaaacacagactgcatcaccaccactgtcacatcatccaaaacagaagcacc 38149137  T
Q  226 gctccctgcatcacttccattcgaaacttcaccaaaaacagtagcacaataaacaacaccatcactctaacatcaccaacctaaacgtctcccttactca 325  Q
     ||||||||||||| ||||||| ||||||||| ||||||||||||||| | || ||||| | || |||||||||||||||| |||| ||||||||  |      
T  38149136 actccctgcatcacctccattcaaaacttcacaaaaaacagtagcacact-aataacactaccattctaacatcaccaaccgaaacatctcccttggttg 38149038  T
Q  326 ccaattc-gaaaacaacgcagatccagatctggatatggt 364  Q
    |||||||  ||||||||||||| ||||||| |||||||||    
T  38149037 ccaattcataaaacaacgcagaaccagatccggatatggt 38148998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 364
Target Start/End: Complemental strand, 32919331 - 32918994
Alignment:
Q  20 gccacacccctgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaac 119  Q
    |||||||||  |||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||   |||||| |||| |||||||||||||||    
T  32919331 gccacacccacgaactcaccaccacacaagaaagagatagtgaac--ttcgcctcccaactcaacaccaa---ccaccacttgtgatacccatcaccaac 32919237  T
Q  120 aaccatcaaaatcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcaccttagacagc 219  Q
    ||||| |||| | |||||||||||||| ||  |||||||||||| ||||||||||| || |||||||||||||||||||||| |||||| |  | |||||    
T  32919236 aaccaccaaa-taaccatcaactcaataaattatgaccttagatatgagatcaccaaacacagactgcatcaccaccacttgaacatcatccaaaacagc 32919138  T
Q  220 agcaccgctccctgcatcacttccattcgaaacttcaccaaaaacagtagcacaataaacaacaccatcactctaacatcaccaacctaaacgtctccct 319  Q
    |||| | |||| |||||||| ||||||||||||||||| ||||||||||||||| | ||||||||   ||||||||||||||||||| |||| |||||||    
T  32919137 agca-cactccttgcatcacctccattcgaaacttcacaaaaaacagtagcacact-aacaacactgccactctaacatcaccaaccgaaacatctccct 32919040  T
Q  320 tactcaccaattc-gaaaacaacgcagatccagatctggatatggt 364  Q
    |  |  |||||||  ||||||||||||||| ||||| |||||||||    
T  32919039 tggttgccaattcataaaacaacgcagatctagatccggatatggt 32918994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 20519249 - 20519534
Alignment:
Q  20 gccacacccctgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaac 119  Q
    |||| ||||| |||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||   |||||| || | |||||||||||||||    
T  20519249 gccatacccccgaactcaccaccacacaagaaagagacaataaac--ttcgcctcccaactcaacaccaa---ccaccacttatgatacccatcaccaac 20519343  T
Q  120 aaccatcaaaatcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcaccttagacagc 219  Q
    ||||| ||||||| |||||||| |||| |||||||| ||||||||||||||||| | |||||||||  |||||||||||||||||||||||| | |||||    
T  20519344 aaccaccaaaatctccatcaacacaatcaaccatgatcttagatctgagatcacaaaacgcagactcaatcaccaccacttggacatcacctaaaacagc 20519443  T
Q  220 agcaccgctccctgcatcacttccattcgaaacttcaccaaaaacagtagcacaataaacaacaccatcactctaacatcaccaacctaaac 311  Q
    | |||  |||||| |||||| ||||||| ||||||||||||||||||| ||||| | |||||||| | ||||||||||||||||||| ||||    
T  20519444 aacactactccctacatcacctccattcaaaacttcaccaaaaacagttgcacact-aacaacactaccactctaacatcaccaaccgaaac 20519534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 20 - 385
Target Start/End: Original strand, 36934489 - 36934851
Alignment:
Q  20 gccacacccctgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaac 119  Q
    |||||||| | |||||||||||||||  |||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||||    
T  36934489 gccacacctccgaactcaccaccaca--agaa-gagacagtgaatatttcgcctcccaactcaacaccaaacaccaccacttgtgatacccatcaccaac 36934585  T
Q  120 aaccatcaaaatcaccatcaactcaattaaccatgaccttagatctga-gatcaccacacgcagactgcatcaccaccacttggacatcaccttagacag 218  Q
    ||||| |||||| |||||||||  ||| |||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||||||||||  ||| ||    
T  36934586 aaccaccaaaattaccatcaac--aataaaccatgaccttcgatctgaagatcaccacactcaggctgcatcaccaccacttggacatcacccaagatag 36934683  T
Q  219 cagcaccgctccctgcatcacttccattcgaaacttcaccaaaaa-cagtagcacaataaacaacaccatcactctaacatcaccaacctaaacgtctcc 317  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||||| ||  ||| || ||| |||||||| |||||  |||||||||||| |||||| |||    
T  36934684 cagcaccactccctgcatcacctcccttcgaaacttcaccaaaaaacaacagcgcactaa-caacaccaccactccgacatcaccaaccgaaacgtgtcc 36934782  T
Q  318 cttactcaccaattc-gaaaacaacgcagatccagatctggatatggtaacagattcaaatccggattc 385  Q
    |||  || | |||||  |||| |||  ||||||| ||| ||||||||| ||||||||| ||||||||||    
T  36934783 cttgatcgcaaattcaaaaaagaacatagatccaaatccggatatggttacagattcagatccggattc 36934851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 148 - 362
Target Start/End: Complemental strand, 5888932 - 5888717
Alignment:
Q  148 aaccatgaccttagatctga-gatcaccacacgcagactgcatcaccaccacttggacatcaccttagacagcagcaccgctccctgcatcacttccatt 246  Q
    ||||| |||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||  ||| |||| |||| |||  |||| ||| ||||||    
T  5888932 aaccacgaccttagatatgaagatcaccacatgcagactacatcaccaccacttggacatcacccaagatagcaacaccactctatgcagcacctccatt 5888833  T
Q  247 cgaaacttcaccaaaaacagtagcacaataaacaacaccatcactctaacatcaccaacctaaacgtctcccttactcaccaattc-gaaaacaacgcag 345  Q
    |||||||||||||||||||| |||||| | |||||||||| |||||  |||||||||||| |||||||||||||  || |||||||  |||||||||||     
T  5888832 cgaaacttcaccaaaaacagcagcacact-aacaacaccaacactccgacatcaccaaccgaaacgtctcccttggtcgccaattcaaaaaacaacgcaa 5888734  T
Q  346 atccagatctggatatg 362  Q
    ||||||||| |||||||    
T  5888733 atccagatcaggatatg 5888717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 5892772 - 5892657
Alignment:
Q  31 gaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaacaaccatcaaaa 130  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||| ||| | || |||||    
T  5892772 gaactcacaaccacacaagaaagagacagtgaacatttcgcctcccaacttaacaccaaacaccaccacttgtgatacccatcactaacgaacaccaaaa 5892673  T
Q  131 tcaccatcaactcaat 146  Q
    ||||||||||||||||    
T  5892672 tcaccatcaactcaat 5892657  T

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Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 113 - 306
Target Start/End: Complemental strand, 27631977 - 27631785
Alignment:
Q  113 caccaacaaccatcaaaatcaccatcaactcaattaaccatgaccttagatctgagatcaccacacgcagactgcatcaccaccacttggacatcacctt 212  Q
    |||||||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||| |||||||||||  |||||||||||      
T  27631977 caccaacaaccaccaaaatcaccatcaactcaataaatcattaccttagatctgagatcaccacatgcagactacatcaccaccatgtggacatcaccca 27631878  T
Q  213 agacagcagcaccgctccctgcatcacttccattcgaaacttcaccaaaaacagtagcacaataaacaacaccatcactctaacatcaccaacc 306  Q
    |||  ||| |||| ||||||||| ||| ||||||| |||| |||||||||| || |||||| | ||||||||||  |||| |||||||||||||    
T  27631877 agatggcatcaccactccctgcaccacctccattcaaaacatcaccaaaaatagcagcacact-aacaacaccactactccaacatcaccaacc 27631785  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 36607706 - 36607593
Alignment:
Q  21 ccacacccctgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaa-accaccaattgtaatacccatcaccaac 119  Q
    ||||||||| |||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| | || ||||||||||| |||    
T  36607706 ccacacccccgaactcactatcacacgagaaagagacattgaacatttcgcctcccaactcaacaccaaaacaccaccactcgtgatacccatcactaac 36607607  T
Q  120 aaccatcaaaatca 133  Q
    ||||| ||||||||    
T  36607606 aaccaccaaaatca 36607593  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 27632018 - 27631962
Alignment:
Q  43 acacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaa 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  27632018 acacaagaaagagacaatgaacatttcgcctcccaactcaacaccaacaaccaccaa 27631962  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 36607590 - 36607544
Alignment:
Q  148 aaccatgaccttagatctga-gatcaccacacgcagactgcatcacc 193  Q
    |||||||||||||||| ||| |||||||||||| |||||||||||||    
T  36607590 aaccatgaccttagatttgaagatcaccacacgtagactgcatcacc 36607544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 21580737 - 21580697
Alignment:
Q  183 actgcatcaccaccacttggacatcaccttagacagcagca 223  Q
    ||||||||||||||||||| ||||||||  |||||||||||    
T  21580737 actgcatcaccaccacttgaacatcaccaaagacagcagca 21580697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 32946746 - 32946613
Alignment:
Q  21 ccacacccctgaactcaccaccacacaagaaagagacagtgaacatttcgcctcccaactcaacaccaaaaaccaccaattgtaatacccatcaccaaca 120  Q
    ||||||||  ||||||||||||||||||||||||  | |||||||||||||||||||| |||||| ||| |||||||| |||| ||||  ||||||||||    
T  32946746 ccacacccacgaactcaccaccacacaagaaaga--cggtgaacatttcgcctcccaaatcaacatcaacaaccaccacttgtgatacatatcaccaaca 32946649  T
Q  121 accatcaaaatcaccatcaactcaattaaccatgac 156  Q
    |||| |||||| ||||| |||||||| |||||||||    
T  32946648 accaccaaaattaccattaactcaataaaccatgac 32946613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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