View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16435_low_17 (Length: 369)
Name: NF16435_low_17
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 41 - 353
Target Start/End: Original strand, 39681339 - 39681651
Alignment:
| Q |
41 |
gtagtagctagtaactaccacattacgctctaaaacttcaacaacaatacatcattataatcaatatataccacaattaagtggcttaattacttagaag |
140 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39681339 |
gtagtagctagtaactaccacgttacgctgtaaaacttcaacaacaatacatcattataatcaatatataccacaattaagtggcttaattacttagaag |
39681438 |
T |
|
| Q |
141 |
aagaaaaaactgatttgtaaatagtaactagaacttagtaccaactatgatgttcacagcaaatacttaaacactagtaaataaaacatgtcatagtaat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39681439 |
aagaaaaaactgatttgtaaatagtaactagaacttagtaccaactatgatgttcacaacaaatacttaaacactagtaaataaaacatgtcatagtaat |
39681538 |
T |
|
| Q |
241 |
tagtgaataaaacataacaaacagaacagattattgttactgatcaaacatctgaatcagacaagtaatatttaaggagttgatggcaatattgaggcag |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39681539 |
tagtgaataaaacataacaaacagaacagattattgttactgatcaaacatctgaatcagacaagtaatatttaaggagttgatggcaatattgaggcaa |
39681638 |
T |
|
| Q |
341 |
gggatcatccttg |
353 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39681639 |
gggatcatccttg |
39681651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University