View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_low_18 (Length: 360)
Name: NF16435_low_18
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 27866143 - 27865805
Alignment:
| Q |
17 |
accaacaaactgatggcaccaaaccaactcaaaatcagactgatatagctnnnnnnnnnnnnngatatcagaaaaattcagaacagtccctgcagaacga |
116 |
Q |
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| T |
27866143 |
accaacaaactgatggcaccaaaccagctcaaaatcagactgatatagctaaaaaatgaaaaagatatcagaaaaattcagaacagtccctgcagaacga |
27866044 |
T |
|
| Q |
117 |
agaaatgcataagatgtaaatgattatttatgaaaagagtactatgatatccgtgtttgcccgtttgtcccaaatttgtgcgcgtatctgctaagcagat |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27866043 |
agaaatgcataagatgtaaatgagtatttatgaaaagagtactatgatatccgtgtttgcccgtttgtcccaaatttgtgcgcgtatctgctaagcagat |
27865944 |
T |
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| Q |
217 |
aagctacatattttaagttagacgcggatatttacaaatatttatgaatgtcaattttttaatgaatttttgtaatgcaaaacnnnnnnnnnnaattact |
316 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
27865943 |
aagctacatattttaagttatacgcggatatttacaaatatatgtgaatgtcaattttttaatggatttttgtaatgcaaaac-tttttttttaattact |
27865845 |
T |
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| Q |
317 |
taaaatataacaacaaaagttcatcactttcatctcactc |
356 |
Q |
| |
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|||||| |||||| ||||||||||||||||||| |||||| |
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| T |
27865844 |
taaaatttaacaataaaagttcatcactttcatttcactc |
27865805 |
T |
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