View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16435_low_2 (Length: 698)

Name: NF16435_low_2
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16435_low_2
NF16435_low_2
[»] chr7 (25 HSPs)
chr7 (16-572)||(46091225-46091782)
chr7 (569-698)||(46091817-46091946)
chr7 (591-698)||(46086737-46086843)
chr7 (317-382)||(12835011-12835076)
chr7 (281-381)||(39539836-39539936)
chr7 (326-381)||(5006584-5006639)
chr7 (323-381)||(35536044-35536102)
chr7 (320-381)||(24973878-24973939)
chr7 (453-532)||(44808228-44808307)
chr7 (311-377)||(30496629-30496695)
chr7 (320-362)||(33894557-33894599)
chr7 (331-381)||(39591542-39591592)
chr7 (309-367)||(40191414-40191472)
chr7 (461-522)||(8094384-8094445)
chr7 (332-381)||(22759132-22759181)
chr7 (331-380)||(28178914-28178963)
chr7 (331-376)||(43152982-43153027)
chr7 (308-381)||(45593794-45593867)
chr7 (325-381)||(1417203-1417259)
chr7 (331-363)||(5715131-5715163)
chr7 (320-380)||(15328540-15328600)
chr7 (282-381)||(30751415-30751512)
chr7 (325-365)||(35007543-35007583)
chr7 (321-381)||(45813255-45813315)
chr7 (461-509)||(46086519-46086567)
[»] chr4 (19 HSPs)
chr4 (303-381)||(30024617-30024695)
chr4 (282-376)||(3662245-3662338)
chr4 (282-363)||(14011130-14011211)
chr4 (284-381)||(42321954-42322051)
chr4 (304-368)||(2980559-2980623)
chr4 (482-537)||(32420974-32421029)
chr4 (281-363)||(19422313-19422395)
chr4 (485-535)||(29600942-29600992)
chr4 (452-522)||(49003973-49004042)
chr4 (309-363)||(51555960-51556014)
chr4 (323-376)||(7601696-7601749)
chr4 (282-347)||(9843775-9843840)
chr4 (320-380)||(25548182-25548240)
chr4 (320-380)||(51044534-51044595)
chr4 (332-376)||(17884014-17884058)
chr4 (321-381)||(30338667-30338727)
chr4 (467-535)||(36462101-36462169)
chr4 (320-360)||(47970252-47970292)
chr4 (392-440)||(50400493-50400541)
[»] chr8 (18 HSPs)
chr8 (309-381)||(7026654-7026726)
chr8 (324-379)||(42597339-42597394)
chr8 (453-532)||(9700071-9700150)
chr8 (305-376)||(14482121-14482192)
chr8 (304-378)||(10727115-10727189)
chr8 (331-375)||(30627983-30628027)
chr8 (320-378)||(1112787-1112845)
chr8 (323-381)||(14280476-14280534)
chr8 (323-377)||(37444494-37444548)
chr8 (310-380)||(40280281-40280351)
chr8 (304-381)||(3645891-3645968)
chr8 (320-381)||(4558732-4558793)
chr8 (304-381)||(13652133-13652210)
chr8 (304-381)||(13710776-13710853)
chr8 (310-375)||(29592254-29592319)
chr8 (336-381)||(35374448-35374493)
chr8 (323-363)||(26215433-26215473)
chr8 (310-358)||(27320240-27320288)
[»] chr3 (23 HSPs)
chr3 (284-358)||(25185891-25185965)
chr3 (282-363)||(52450145-52450226)
chr3 (309-380)||(16790432-16790503)
chr3 (331-381)||(15304422-15304472)
chr3 (310-380)||(44374720-44374790)
chr3 (320-381)||(1395605-1395666)
chr3 (282-363)||(24235776-24235857)
chr3 (282-363)||(25964338-25964419)
chr3 (282-363)||(41159005-41159086)
chr3 (333-381)||(36783409-36783457)
chr3 (452-532)||(50211804-50211884)
chr3 (325-376)||(2128331-2128382)
chr3 (331-381)||(10101551-10101601)
chr3 (331-381)||(10212476-10212526)
chr3 (331-381)||(36646457-36646507)
chr3 (331-381)||(42809246-42809296)
chr3 (282-364)||(48528474-48528556)
chr3 (331-381)||(49586991-49587041)
chr3 (320-381)||(20192681-20192742)
chr3 (285-379)||(48364956-48365046)
chr3 (280-328)||(2519581-2519629)
chr3 (325-381)||(32703077-32703133)
chr3 (324-380)||(40122828-40122884)
[»] chr5 (14 HSPs)
chr5 (304-381)||(6733968-6734044)
chr5 (320-365)||(13224363-13224408)
chr5 (343-379)||(36157912-36157948)
chr5 (320-363)||(7096220-7096263)
chr5 (332-379)||(10363696-10363743)
chr5 (304-363)||(20982228-20982287)
chr5 (282-328)||(1084234-1084280)
chr5 (304-381)||(9202823-9202901)
chr5 (325-379)||(12407738-12407792)
chr5 (310-364)||(26516222-26516276)
chr5 (336-381)||(12975297-12975342)
chr5 (321-374)||(39128574-39128627)
chr5 (281-381)||(4855593-4855693)
chr5 (304-380)||(37618915-37618991)
[»] chr1 (22 HSPs)
chr1 (304-381)||(40304129-40304206)
chr1 (322-368)||(172277-172323)
chr1 (419-531)||(10199330-10199445)
chr1 (324-380)||(50319230-50319286)
chr1 (331-377)||(37841943-37841989)
chr1 (306-380)||(38651485-38651559)
chr1 (482-535)||(37416904-37416957)
chr1 (290-379)||(40357963-40358052)
chr1 (308-381)||(44032074-44032147)
chr1 (476-517)||(45769692-45769733)
chr1 (344-381)||(47877080-47877117)
chr1 (307-380)||(48748659-48748731)
chr1 (323-363)||(2194451-2194491)
chr1 (464-532)||(3319867-3319935)
chr1 (322-378)||(4549802-4549858)
chr1 (332-380)||(14737781-14737829)
chr1 (325-381)||(23895275-23895331)
chr1 (328-380)||(26293182-26293234)
chr1 (288-360)||(33339516-33339588)
chr1 (325-377)||(36151584-36151636)
chr1 (320-376)||(46499934-46499990)
chr1 (331-379)||(49517015-49517063)
[»] chr6 (16 HSPs)
chr6 (311-381)||(1810378-1810445)
chr6 (322-381)||(29274304-29274363)
chr6 (331-381)||(281923-281973)
chr6 (311-381)||(10452435-10452505)
chr6 (331-381)||(24782004-24782054)
chr6 (320-381)||(4006648-4006709)
chr6 (282-359)||(4247731-4247808)
chr6 (288-348)||(8010259-8010319)
chr6 (461-533)||(26559159-26559231)
chr6 (282-381)||(9668060-9668159)
chr6 (323-377)||(9093635-9093689)
chr6 (335-381)||(30537021-30537067)
chr6 (482-535)||(12111066-12111119)
chr6 (289-362)||(27889937-27890010)
chr6 (325-377)||(24836278-24836330)
chr6 (322-378)||(33068639-33068695)
[»] chr2 (24 HSPs)
chr2 (281-365)||(7936921-7937005)
chr2 (320-380)||(11344360-11344420)
chr2 (304-381)||(3673725-3673802)
chr2 (310-383)||(35809857-35809929)
chr2 (281-381)||(17952776-17952876)
chr2 (314-442)||(25609724-25609852)
chr2 (320-376)||(36114603-36114659)
chr2 (306-381)||(18962113-18962188)
chr2 (331-377)||(656856-656902)
chr2 (304-381)||(11393440-11393518)
chr2 (304-381)||(11410101-11410179)
chr2 (482-532)||(15370244-15370294)
chr2 (322-380)||(32098384-32098442)
chr2 (331-381)||(40837503-40837553)
chr2 (322-363)||(5133708-5133749)
chr2 (320-381)||(28902011-28902072)
chr2 (304-377)||(35459828-35459901)
chr2 (282-357)||(9477860-9477936)
chr2 (324-360)||(21280489-21280525)
chr2 (283-347)||(26484193-26484257)
chr2 (486-530)||(33931493-33931537)
chr2 (295-363)||(35329912-35329980)
chr2 (282-381)||(40722552-40722649)
chr2 (324-360)||(44064393-44064429)
[»] scaffold0024 (1 HSPs)
scaffold0024 (320-381)||(27510-27571)
[»] scaffold0590 (1 HSPs)
scaffold0590 (311-363)||(1167-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (311-363)||(2756-2808)
[»] scaffold0020 (1 HSPs)
scaffold0020 (321-363)||(160065-160107)
[»] scaffold0110 (1 HSPs)
scaffold0110 (277-313)||(3981-4017)


Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 16 - 572
Target Start/End: Original strand, 46091225 - 46091782
Alignment:
Q  16 tcatccaagtgcatatatttcaaaactttattaaaggaggtctagagtcaattcattgatgcaatatcttgtatgtgatgatagttcttggagtgaagag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  46091225 tcatccaagtgcatatatttcaaaactttattaaaggaggtctagagtcaattcactgttgcaatatcttgtatgtgatgatagttcttggagtgaagag 46091324  T
Q  116 tatagtttggaaaacttaa-gattaaatcccttgtagtgacacaaaattggctgactgattttggagatgaaaggtgaatcnnnnnnnnnnnnnnnn-gg 213  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||                 ||    
T  46091325 tatagtttggaaaacttaaagattaaatccctt-tagtgacacaaaattggctgactgattttggagatgaaaggtgaatctttttttttttttttttgg 46091423  T
Q  214 tcagggatgaatctttcttttctaacatggattgtttttagtttgttgtttgtaaaagtttttgactatgtttggataaacaatttaatgaagtgtttat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46091424 tcagggatgaatctttcttttctaacatggattgtttttagtttgttgtttgtaaaagtttttgactatgtttggataaacaatttaatgaagtgtttat 46091523  T
Q  314 cacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatatttaccatagtttgttttcagaaattataatga 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46091524 cacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatatttaccatagtttgttttcagaaattatcatga 46091623  T
Q  414 aaagtttatgaaaataagttgaaaacaacggatgaaaatataaattattttcataagttctatcaattagtctcacaaatgcttatactattagatgagc 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46091624 aaagtttatgaaaataagttgaaaacaacggatgaaaatataaattattttcataagttctatcaattagtctcacaaatgcttatactattagatgagc 46091723  T
Q  514 tcaaataagttaatccaaatagacatttggtgtgatgtgataattagtttaacgactat 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46091724 tcaaataagttaatccaaatagacatttggtgtgatgtgataattagtataacgactat 46091782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 569 - 698
Target Start/End: Original strand, 46091817 - 46091946
Alignment:
Q  569 ctatctttgactatggaggtcatttcattaattataattttttgcttatgctcataaaatgttttctctattcagctaaaaaatgcagggagcttgttgg 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46091817 ctatctttgactatggaggtcatttcattaattataattttttgcttatgctcataaaatgttttctctattcagctaaaaaatgcagggagcttgttgg 46091916  T
Q  669 caagaatacatcatccaaaagtgggaagtt 698  Q
    ||||||||||||||||||||||||||||||    
T  46091917 caagaatacatcatccaaaagtgggaagtt 46091946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 591 - 698
Target Start/End: Original strand, 46086737 - 46086843
Alignment:
Q  591 tttcattaattataattttttgcttatgctcataaaatgttttctctattcagctaaaaaatgcagggagcttgttggcaagaatacatcatccaaaagt 690  Q
    ||||||||| |||||||| | | ||||| ||| | | |||||||||  ||||||| ||||||||||||||||||||||| ||||  | ||||||||||||    
T  46086737 tttcattaactataatttct-gtttatgatcacacactgttttctccgttcagctgaaaaatgcagggagcttgttggcgagaacgcgtcatccaaaagt 46086835  T
Q  691 gggaagtt 698  Q
    ||||||||    
T  46086836 gggaagtt 46086843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 317 - 382
Target Start/End: Complemental strand, 12835076 - 12835011
Alignment:
Q  317 atgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatatt 382  Q
    ||||||||||||||| | |||||| ||| ||| |||||||||||||| | ||||||||||||||||    
T  12835076 atgagtgcttatgcagatgctatttctacaacaaaagataaaataaagtcaaattgttttcatatt 12835011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 281 - 381
Target Start/End: Complemental strand, 39539936 - 39539836
Alignment:
Q  281 atgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    |||||||||||||||| ||||| ||||| |||||| || | ||||| || |||||||||| | ||||  ||||  |||||||| | ||||||||||||||    
T  39539936 atgtttggataaacaacttaattaagtgcttatcatataactgcttttgtataagctatttcgataataaaagtgaaaataaattcaaattgttttcata 39539837  T
Q  381 t 381  Q
    |    
T  39539836 t 39539836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 5006639 - 5006584
Alignment:
Q  326 tatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||| |||||||||||||||||| |||||||||||||| | ||| |||||||||||    
T  5006639 tatgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatat 5006584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 35536044 - 35536102
Alignment:
Q  323 gcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||| |||||||||| |||||||  ||||||||||||| | |||||||||||||||    
T  35536044 gcttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatat 35536102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 24973878 - 24973939
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||| | |||||||| ||||||| |||||||||||||| | ||||||||| |||||    
T  24973878 agtgcttatgtaaaagctatttctataacaaaagataaaataaattcaaattgtttccatat 24973939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 532
Target Start/End: Original strand, 44808228 - 44808307
Alignment:
Q  453 ataaattattttcataagttctatcaattagtctcacaaatgcttatactattagatgagctcaaataagttaatccaaa 532  Q
    |||| ||||||||||||| ||||||||  ||||| |||| ||||||| ||| || || |||||||||||| | |||||||    
T  44808228 ataagttattttcataaggtctatcaaacagtctgacaactgcttatgctaataaataagctcaaataaggttatccaaa 44808307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 377
Target Start/End: Original strand, 30496629 - 30496695
Alignment:
Q  311 tatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttc 377  Q
    |||||||| |||| ||||| |||| ||||| ||||||| ||| |||||||||| | |||||||||||    
T  30496629 tatcacataagtgtttatgtataaactatttctataacaaaatataaaataaagtcaaattgttttc 30496695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 33894557 - 33894599
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataa 362  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  33894557 agtgcttatgtataagctatttctataacaaaagataaaataa 33894599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 39591592 - 39591542
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||| |||| ||||||| |||||||||||||| | |||||||||||||||    
T  39591592 ataagttatttctataacaaaagataaaataaagtcaaattgttttcatat 39591542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 40191472 - 40191414
Alignment:
Q  309 tttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataa 367  Q
    ||||||| |||||| || |||| ||||||||| ||| ||| ||||||||||||||||||    
T  40191472 tttatcatatgagtactaatgcttaagctatttctaaaacaaaagataaaataaaataa 40191414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 522
Target Start/End: Original strand, 8094384 - 8094445
Alignment:
Q  461 ttttcataagttctatcaattagtctcacaaatgcttatactattagatgagctcaaataag 522  Q
    |||||||||  ||| |||| ||||||||||| ||||||| ||| ||||| ||||||||||||    
T  8094384 ttttcataaaatctctcaaatagtctcacaagtgcttatgctagtagataagctcaaataag 8094445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 22759132 - 22759181
Alignment:
Q  332 taagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||  |||||| ||||||||||||||  ||||||||||||||||    
T  22759132 taagctatttgtataacaaaagataaaataaaggaaaattgttttcatat 22759181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Original strand, 28178914 - 28178963
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    |||||||||| ||||||| |||||||||||||| | | ||||||||||||    
T  28178914 ataagctatttctataacaaaagataaaataaagtcatattgttttcata 28178963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 43153027 - 43152982
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgtttt 376  Q
    |||||||||| ||||||| |||||||||||||| | ||||||||||    
T  43153027 ataagctatttctataacaaaagataaaataaagttaaattgtttt 43152982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 45593867 - 45593794
Alignment:
Q  308 gtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||| || | |||||||| |||||||||| || |||| ||| |||||||||| | ||| |||||||||||    
T  45593867 gtttatcatataaatgcttatgtataagctatttctgtaacaaaacataaaataaagtcaaactgttttcatat 45593794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 1417203 - 1417259
Alignment:
Q  325 ttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||| |||| |||||  |||||| |||||||||||||| | |||||||||||||||    
T  1417203 ttatgtataaactatttatataacaaaagataaaataaagtcaaattgttttcatat 1417259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 5715163 - 5715131
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaa 363  Q
    |||||||||| ||||||||||||||||||||||    
T  5715163 ataagctatttctataacgaaagataaaataaa 5715131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 320 - 380
Target Start/End: Original strand, 15328540 - 15328600
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    ||||||||||||||| ||||| ||||||  |||||||||||||| | |||| |||| ||||    
T  15328540 agtgcttatgcataatctatttctataataaaagataaaataaagttaaatcgtttacata 15328600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 282 - 381
Target Start/End: Original strand, 30751415 - 30751512
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||||||| ||  || |||||||||||| || ||||||| || |||| |||||  | |||| ||| |||||||||| | ||||| |||||||||    
T  30751415 tgtttggataaacagtt--attaagtgtttatcatataagtgcttgtgaataaactatttttgtaacaaaatataaaataaagtcaaattattttcatat 30751512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 35007543 - 35007583
Alignment:
Q  325 ttatgcataagctattcctataacgaaagataaaataaaat 365  Q
    ||||| |||||||||| ||||||| ||||||||||||||||    
T  35007543 ttatgtataagctatttctataactaaagataaaataaaat 35007583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 381
Target Start/End: Complemental strand, 45813315 - 45813255
Alignment:
Q  321 gtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||||  |||||||||| ||||| | |||||||||||||| | || ||||||||||||    
T  45813315 gtgcttatttataagctatttctataccaaaagataaaataaagtcaacttgttttcatat 45813255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 461 - 509
Target Start/End: Original strand, 46086519 - 46086567
Alignment:
Q  461 ttttcataagttctatcaattagtctcacaaatgcttatactattagat 509  Q
    |||||||||| ||| |||| |||||||||||||| |||||| |||||||    
T  46086519 ttttcataagctctttcaaatagtctcacaaatgtttataccattagat 46086567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 30024617 - 30024695
Alignment:
Q  303 gaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||| |||||||| || ||| |||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||    
T  30024617 gaagcgtttatcatataagtacttatgcataagttatttctataacaaaagataaaataaagtaaaattgttttcatat 30024695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 3662245 - 3662338
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgtttt 376  Q
    ||||||| ||||||  ||| | ||||||||||||  | |||||||||| |||| ||||||||||||| |||||||||||||| | ||| ||||||    
T  3662245 tgtttggctaaacagcttacttaagtgtttatcatgttagtgcttatg-ataaactattcctataacaaaagataaaataaagtcaaactgtttt 3662338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 363
Target Start/End: Original strand, 14011130 - 14011211
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    ||||||||||||||| ||||| |||||||||||| || | || || || |||||||| |  |||||| ||||||||||||||    
T  14011130 tgtttggataaacaacttaattaagtgtttatcatataaatgattgtgtataagctagttttataacaaaagataaaataaa 14011211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 42322051 - 42321954
Alignment:
Q  284 tttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||||||||| ||| ||| | | ||||  ||| |||| ||||| ||||||||||  |||||| || ||||||||||| | |||||||||||||||    
T  42322051 tttggataaacaacttagtgaggcgcttatagcataagtgtttatgaataagctatttttataacaaatgataaaataaagtcaaattgttttcatat 42321954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 368
Target Start/End: Complemental strand, 2980623 - 2980559
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaa 368  Q
    |||||||||||| || |||||||||| |||||||||| ||||||| ||| || ||| ||||||||    
T  2980623 aagtgtttatcatataagtgcttatgtataagctatttctataacaaaaaatgaaacaaaataaa 2980559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 482 - 537
Target Start/End: Complemental strand, 32421029 - 32420974
Alignment:
Q  482 agtctcacaaatgcttatactattagatgagctcaaataagttaatccaaatagac 537  Q
    |||||||||| ||||||| ||| ||| | ||||||||||||| |||||||||||||    
T  32421029 agtctcacaagtgcttatgctagtaggtaagctcaaataagtcaatccaaatagac 32420974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 363
Target Start/End: Original strand, 19422313 - 19422395
Alignment:
Q  281 atgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    |||||||||||||||  ||||| ||| | |||||| || | |||||||| ||||| |||| ||||||| ||||||| ||||||    
T  19422313 atgtttggataaacagcttaattaagcgcttatcatataaatgcttatgtataagttatttctataacaaaagatataataaa 19422395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 535
Target Start/End: Complemental strand, 29600992 - 29600942
Alignment:
Q  485 ctcacaaatgcttatactattagatgagctcaaataagttaatccaaatag 535  Q
    |||||||||||||||||||  | || ||||||||||||| |||||||||||    
T  29600992 ctcacaaatgcttatactagcaaataagctcaaataagtaaatccaaatag 29600942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 522
Target Start/End: Complemental strand, 49004042 - 49003973
Alignment:
Q  452 tataaattattttcataagttctatcaattagtctcacaaatgcttatactattagatgagctcaaataag 522  Q
    ||||| ||||||||||||||||| |||| ||||||||||||  ||||  ||| ||||| ||||||||||||    
T  49004042 tataacttattttcataagttctctcaaatagtctcacaaa-acttaagctagtagataagctcaaataag 49003973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 51556014 - 51555960
Alignment:
Q  309 tttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    ||||||| || |||||||||| ||||||||||  |||||| ||||||||||||||    
T  51556014 tttatcatataagtgcttatgtataagctattattataacaaaagataaaataaa 51555960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 7601696 - 7601749
Alignment:
Q  323 gcttatgcataagctattcctataacgaaagataaaataaaataaaattgtttt 376  Q
    ||||||| |||||||||||||||| | || ||||||||||| | ||||||||||    
T  7601696 gcttatgtataagctattcctatagcaaaggataaaataaagttaaattgtttt 7601749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 9843840 - 9843775
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataa 347  Q
    ||||||||||||||| ||||  ||||| |||||| || | |||||||| |||||||||| ||||||    
T  9843840 tgtttggataaacaacttaaataagtgcttatcatataactgcttatgtataagctatttctataa 9843775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 25548240 - 25548182
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    ||||||||||||||||||||| |||||||  ||| ||||||||| | || |||||||||||    
T  25548240 agtgcttatgcataagctatttctataac--aaggtaaaataaagttaagttgttttcata 25548182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 51044595 - 51044534
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaat-aaaattgttttcata 380  Q
    |||| ||||| |||||||||| ||||||| |||||||||||||| | ||| |||||||||||    
T  51044595 agtgtttatgtataagctatttctataacaaaagataaaataaagtcaaacttgttttcata 51044534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 17884014 - 17884058
Alignment:
Q  332 taagctattcctataacgaaagataaaataaaataaaattgtttt 376  Q
    ||||||||| ||||||| |||||||||||||| | ||||||||||    
T  17884014 taagctatttctataacaaaagataaaataaagttaaattgtttt 17884058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 381
Target Start/End: Complemental strand, 30338727 - 30338667
Alignment:
Q  321 gtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||||| |||| ||||| ||||||| ||||||| |||||| | ||| |||||||||||    
T  30338727 gtgcttatgtataaactatttctataacaaaagatagaataaagttaaactgttttcatat 30338667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 467 - 535
Target Start/End: Original strand, 36462101 - 36462169
Alignment:
Q  467 taagttctatcaattagtctcacaaatgcttatactattagatgagctcaaataagttaatccaaatag 535  Q
    |||| ||| ||||| |||||||||| ||||||||| | || || |  ||||||||||||||||||||||    
T  36462101 taagctctctcaatcagtctcacaattgcttataccaatatataaattcaaataagttaatccaaatag 36462169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 47970252 - 47970292
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaat 360  Q
    |||||||||| |||||||||| ||||||| |||||||||||    
T  47970252 agtgcttatgtataagctatttctataacaaaagataaaat 47970292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 50400493 - 50400541
Alignment:
Q  392 ttgttttcagaaattataatgaaaagtttatgaaaataagttgaaaaca 440  Q
    ||||||||| ||| ||| ||||||| |||||||||||||| ||||||||    
T  50400493 ttgttttcataaactatcatgaaaactttatgaaaataagctgaaaaca 50400541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 7026654 - 7026726
Alignment:
Q  309 tttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||| || ||||||||||||||||||| |  |||||| |||||||||||||| |||||||||||||||||    
T  7026654 tttatcatataagtgcttatgcataagctactgttataacaaaagataaaataaagtaaaattgttttcatat 7026726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 324 - 379
Target Start/End: Original strand, 42597339 - 42597394
Alignment:
Q  324 cttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcat 379  Q
    |||||| |||||||||| ||||||| |||||||||||||| |||||||||||||||    
T  42597339 cttatgtataagctatttctataacaaaagataaaataaagtaaaattgttttcat 42597394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 453 - 532
Target Start/End: Original strand, 9700071 - 9700150
Alignment:
Q  453 ataaattattttcataagttctatcaattagtctcacaaatgcttatactattagatgagctcaaataagttaatccaaa 532  Q
    |||||||  ||||| ||| ||| |||| ||||||||||| || |||| ||| ||||| ||||||||||||||||||||||    
T  9700071 ataaattgatttcacaagctctctcaaatagtctcacaagtgtttatgctagtagataagctcaaataagttaatccaaa 9700150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 14482121 - 14482192
Alignment:
Q  305 agtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgtttt 376  Q
    |||| |||||| || |||||||||| |||| ||||| ||||||| |||||||||||||| | ||||||||||    
T  14482121 agtgcttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagtcaaattgtttt 14482192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 10727115 - 10727189
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttca 378  Q
    ||||||| |||| || ||||||||||||||||||||| ||||| | |||||| ||||||| | ||| ||||||||    
T  10727115 aagtgttcatcatataagtgcttatgcataagctatttctatagcaaaagatgaaataaattcaaagtgttttca 10727189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 30628027 - 30627983
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttt 375  Q
    |||||||||| || |||| ||||||||||||||||||||||||||    
T  30628027 ataagctatttctgtaacaaaagataaaataaaataaaattgttt 30627983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 1112787 - 1112845
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttca 378  Q
    |||||||||| ||| |||||| ||||||| |||||||||||||  | ||||||||||||    
T  1112787 agtgcttatgtatatgctatttctataacaaaagataaaataaggttaaattgttttca 1112845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 14280534 - 14280476
Alignment:
Q  323 gcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||| |||| ||||| ||||| | ||||||||||| |||| |||||||||||||||    
T  14280534 gcttatgtataacctatttctatagcaaaagataaaattaaattaaattgttttcatat 14280476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 37444548 - 37444494
Alignment:
Q  323 gcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttc 377  Q
    ||||||| |||||||||| ||||||| ||||||||| |||| | |||||||||||    
T  37444548 gcttatgtataagctattactataacaaaagataaagtaaagttaaattgttttc 37444494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 40280351 - 40280281
Alignment:
Q  310 ttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    |||||| || ||||| |||  ||||| |||| ||| ||| |||||||||||||| ||||||||||||||||    
T  40280351 ttatcatataagtgcctatatataagttatttctacaacaaaagataaaataaagtaaaattgttttcata 40280281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 3645968 - 3645891
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||||| || ||||||| || |||||||||| ||||||  ||| |||||| ||||| ||| | |||||||||    
T  3645968 aagtgtttatcatataagtgcttgtgtataagctatttctataagaaaatataaaacaaaatcaaactattttcatat 3645891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 4558732 - 4558793
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||| ||||| |||||||||| ||||||  |||||||||||||| | ||||| |||||||||    
T  4558732 agtgtttatgtataagctatttctataataaaagataaaataaagttaaattattttcatat 4558793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 381
Target Start/End: Original strand, 13652133 - 13652210
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||||||||  | |||||||||| |||||||||| ||||| | ||||||  ||| || | |||||||||||||||    
T  13652133 aagtgtttatcatctaagtgcttatgtataagctatttctatagcaaaagatggaatgaagtgaaattgttttcatat 13652210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 381
Target Start/End: Original strand, 13710776 - 13710853
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||||||||  | |||||||||| |||||||||| ||||| | ||||||  ||| || | |||||||||||||||    
T  13710776 aagtgtttatcatctaagtgcttatgtataagctatttctatagcaaaagatggaatgaagtgaaattgttttcatat 13710853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 29592319 - 29592254
Alignment:
Q  310 ttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttt 375  Q
    |||||| || ||||||| |||||||||||||  || ||| ||| ||||||||||||||||| ||||    
T  29592319 ttatcatattagtgcttctgcataagctatttttacaacaaaatataaaataaaataaaatagttt 29592254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 35374493 - 35374448
Alignment:
Q  336 ctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||| ||||| |||||||||||||||| | |||||||||||||||    
T  35374493 ctatttctatagcgaaagataaaataaagttaaattgttttcatat 35374448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 26215433 - 26215473
Alignment:
Q  323 gcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    ||||||| |||||||||| ||||||| ||||||||||||||    
T  26215433 gcttatgtataagctatttctataacaaaagataaaataaa 26215473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 27320240 - 27320288
Alignment:
Q  310 ttatcacatgagtgcttatgcataagctattcctataacgaaagataaa 358  Q
    ||||||||| |||||||| | |||||||||||||||| | |||||||||    
T  27320240 ttatcacataagtgcttacgtataagctattcctatagcaaaagataaa 27320288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 25185891 - 25185965
Alignment:
Q  284 tttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaa 358  Q
    ||||||||||||| ||||| |||||||||||| || |||||||||| ||||| ||||  |||||| |||||||||    
T  25185891 tttggataaacaacttaattaagtgtttatcatataagtgcttatgaataagatatttatataacaaaagataaa 25185965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 52450226 - 52450145
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    ||||||||||||||  ||||| |||||||||||| |  ||| ||||||||||||| ||| ||||||| |||||| |||||||    
T  52450226 tgtttggataaacagcttaatcaagtgtttatcatacaagtacttatgcataagcaatttctataacaaaagatgaaataaa 52450145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 16790503 - 16790432
Alignment:
Q  309 tttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    ||||||| || |||||||||| ||||||||||  |||||| | |||||||||||||| ||||| ||||||||    
T  16790503 tttatcatataagtgcttatgtataagctatttttataacaacagataaaataaaatcaaattattttcata 16790432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 15304472 - 15304422
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||| ||||||| |||||||||||||| | |||||||||||||||    
T  15304472 ataagctatttctataacaaaagataaaataaagttaaattgttttcatat 15304422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 44374790 - 44374720
Alignment:
Q  310 ttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    |||||| || |||||||||| |||||||||  || |||| |||||||||||||| | ||||||||||||||    
T  44374790 ttatcatataagtgcttatgtataagctatatctttaacaaaagataaaataaagtcaaattgttttcata 44374720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 1395605 - 1395666
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||| |||| |||||||||| ||||||| |||||||||||||| | ||||| |||||||||    
T  1395605 agtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatat 1395666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 24235857 - 24235776
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    ||||||||||||||| ||||| |||||||||| |||| ||  ||| || ||||| |||| ||||||| |||||||| |||||    
T  24235857 tgtttggataaacaacttaattaagtgtttataacataagcacttgtgtataagttatttctataacaaaagataatataaa 24235776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 363
Target Start/End: Original strand, 25964338 - 25964419
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    |||| |||||||||| ||||| ||||| |||||| || ||| ||| || ||||||||||  |||||| ||||||||||||||    
T  25964338 tgttgggataaacaacttaattaagtgcttatcatataagttcttttgtataagctatttttataacaaaagataaaataaa 25964419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 363
Target Start/End: Original strand, 41159005 - 41159086
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    ||||||||||| ||| ||||| ||  | |||||  || |||||||||| ||||| |||||||||||| ||||||||||||||    
T  41159005 tgtttggataaccaacttaattaaacgcttatcgtataagtgcttatgtataagttattcctataactaaagataaaataaa 41159086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 36783457 - 36783409
Alignment:
Q  333 aagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||| ||||| | |||||||||||||| |||||||||||||||||    
T  36783457 aagctatttctataccaaaagataaaataaagtaaaattgttttcatat 36783409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 532
Target Start/End: Original strand, 50211804 - 50211884
Alignment:
Q  452 tataaattattttcataagttctatcaattagtctcacaaatgcttatactattagatgagctcaaataagttaatccaaa 532  Q
    ||||| || |||||||||||||| ||||  ||||| |||| |||||||  || ||||| |||| |||||||||||||||||    
T  50211804 tataagttgttttcataagttctctcaaacagtcttacaagtgcttatgttagtagataagctaaaataagttaatccaaa 50211884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 2128382 - 2128331
Alignment:
Q  325 ttatgcataagctattcctataacgaaagataaaataaaataaaattgtttt 376  Q
    ||||| |||||||||| ||||||| |||||||||||||| | ||||||||||    
T  2128382 ttatgtataagctatttctataacaaaagataaaataaagttaaattgtttt 2128331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 10101601 - 10101551
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||| |||| ||||||| |||||||||||||| | |||||||||||||||    
T  10101601 ataagttatttctataacaaaagataaaataaagttaaattgttttcatat 10101551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 10212526 - 10212476
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||| |||| ||||||| |||||||||||||| | |||||||||||||||    
T  10212526 ataagttatttctataacaaaagataaaataaagttaaattgttttcatat 10212476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 36646507 - 36646457
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||| |||| || |||||||||||||| || ||||||||||||||    
T  36646507 ataagctatttctatgacaaaagataaaataaagtataattgttttcatat 36646457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 42809246 - 42809296
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||| ||||||| |||||||||||| | | |||||||||||||||    
T  42809246 ataagctatttctataacaaaagataaaatatagttaaattgttttcatat 42809296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 364
Target Start/End: Original strand, 48528474 - 48528556
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaa 364  Q
    ||||||||||||||| | ||| ||| | |||||| || ||| |||||| |||||||||| ||||||| | | |||||||||||    
T  48528474 tgtttggataaacaactgaattaagagcttatcatataagtacttatgtataagctatttctataacaagaaataaaataaaa 48528556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 49587041 - 49586991
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||| ||||||| |||||||||||||| | ||| |||||||||||    
T  49587041 ataagctatttctataacaaaagataaaataaagtcaaactgttttcatat 49586991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 381
Target Start/End: Complemental strand, 20192742 - 20192681
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||| ||||||||||  |||||| |||||||||||||| | |||  ||||||||||    
T  20192742 agtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatat 20192681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 379
Target Start/End: Complemental strand, 48365046 - 48364956
Alignment:
Q  285 ttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcat 379  Q
    ||||||| |||| ||||| ||| |||||||| ||||    ||||| ||||| |||| | ||||| |||||||||||||| | |||||||||||||    
T  48365046 ttggatatacaaattaattaagagtttatcatatga----ttatgtataagttatttcgataacaaaagataaaataaagtcaaattgttttcat 48364956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 2519581 - 2519629
Alignment:
Q  280 tatgtttggataaacaatttaatgaagtgtttatcacatgagtgcttat 328  Q
    ||||||||||||||||| ||||| ||| |||||| |||| |||||||||    
T  2519581 tatgtttggataaacaacttaatcaagcgtttataacataagtgcttat 2519629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 32703077 - 32703133
Alignment:
Q  325 ttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||| |||||||||| |||| |  |||||||||||||| | |||||||||||||||    
T  32703077 ttatgtataagctatttctattataaaagataaaataaactcaaattgttttcatat 32703133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 40122884 - 40122828
Alignment:
Q  324 cttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    |||||| |||||||||| | ||||| |||||||||||||| | ||| ||||||||||    
T  40122884 cttatgtataagctatttcaataacaaaagataaaataaagtcaaactgttttcata 40122828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 6734044 - 6733968
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||| |||||| || |||| |||||||||| |||||  ||||||||||||||||||||| | |||||||||||||||    
T  6734044 aagtgattatcatataagtgtttatgcataatctatttttataacgaaagataaaataaagt-aaattgttttcatat 6733968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 13224363 - 13224408
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaat 365  Q
    |||||||||| |||||||||| ||||||| ||||||||||||||||    
T  13224363 agtgcttatgtataagctatttctataacaaaagataaaataaaat 13224408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 36157948 - 36157912
Alignment:
Q  343 tataacgaaagataaaataaaataaaattgttttcat 379  Q
    |||||| ||||||||||||||||||||||||||||||    
T  36157948 tataacaaaagataaaataaaataaaattgttttcat 36157912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 363
Target Start/End: Complemental strand, 7096263 - 7096220
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    |||||||||| |||||||||| ||||||| ||||||||||||||    
T  7096263 agtgcttatgtataagctatttctataacaaaagataaaataaa 7096220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 10363696 - 10363743
Alignment:
Q  332 taagctattcctataacgaaagataaaataaaataaaattgttttcat 379  Q
    ||||||||| ||||||| |||||||||||||| | |||||||||||||    
T  10363696 taagctatttctataacaaaagataaaataaagttaaattgttttcat 10363743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 20982287 - 20982228
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    ||||| |||||| || |||||||||| |||||||||| ||||||| || |||||||||||    
T  20982287 aagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaa 20982228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 1084280 - 1084234
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttat 328  Q
    ||||||||||||||| ||||| |||||||||||| || |||||||||    
T  1084280 tgtttggataaacaacttaattaagtgtttatcatataagtgcttat 1084234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 9202901 - 9202823
Alignment:
Q  304 aagtgtttatcac-atgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||||||||  || |||||||||  |||||||||| || || | |||||||||||||| | |||||||||||||||    
T  9202901 aagtgtttatcatgataagtgcttatatataagctatttctgtagcaaaagataaaataaagttaaattgttttcatat 9202823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 12407792 - 12407738
Alignment:
Q  325 ttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcat 379  Q
    ||||| |||||||||| ||||||| |||||||||||||| ||||  |||||||||    
T  12407792 ttatgtataagctatttctataacaaaagataaaataaagtaaatctgttttcat 12407738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 26516222 - 26516276
Alignment:
Q  310 ttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaa 364  Q
    |||||| || |||||||||| |||||||||| ||| ||| |||||||||||||||    
T  26516222 ttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaaa 26516276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 12975297 - 12975342
Alignment:
Q  336 ctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||||||||| ||  |||||||||||| |||||||||||||||    
T  12975297 ctattcctataacaaagaataaaataaaatcaaattgttttcatat 12975342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 39128574 - 39128627
Alignment:
Q  321 gtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgtt 374  Q
    ||||||||| |||||||| | ||||||| |||||||||||||| | ||||||||    
T  39128574 gtgcttatgtataagctaattctataacaaaagataaaataaagtcaaattgtt 39128627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 4855593 - 4855693
Alignment:
Q  281 atgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    |||||||||||||||| ||||| || |  ||||  ||| ||| |||||| || |||||||  |||||| ||| |||||||||| | |||||||| |||||    
T  4855593 atgtttggataaacaacttaattaaatacttatagcataagtacttatgtattagctatttttataacaaaaaataaaataaagttaaattgttatcata 4855692  T
Q  381 t 381  Q
    |    
T  4855693 t 4855693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 37618991 - 37618915
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    |||||||||||  || |||||||||||| |||||||| |||| |  ||||||||||| |||| ||| ||||| ||||    
T  37618991 aagtgtttatcgtataagtgcttatgcaaaagctatttctattataaaagataaaatgaaatcaaactgtttacata 37618915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 40304206 - 40304129
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||||| || | |||||| | ||||||||||  |||||| |||||||||||||||| | |||||||||||||    
T  40304206 aagtgtttatcatattattgcttaggtataagctatttatataacaaaagataaaataaaatcacattgttttcatat 40304129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 172277 - 172323
Alignment:
Q  322 tgcttatgcataagctattcctataacgaaagataaaataaaataaa 368  Q
    |||||||| |||||||||| ||||||| |||||||||||||||||||    
T  172277 tgcttatgtataagctatttctataactaaagataaaataaaataaa 172323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 531
Target Start/End: Complemental strand, 10199445 - 10199330
Alignment:
Q  419 ttatgaaaataagttgaaaacaacggatgaaaat---ataaattattttcataagttctatcaattagtctcacaaatgcttatactattagatgagctc 515  Q
    ||||||||||||| ||||||||||  ||||| ||   ||||  ||||||||| ||||||  ||| |||| |||||| |||||||  || ||||| |||||    
T  10199445 ttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataagctc 10199346  T
Q  516 aaataagttaatccaa 531  Q
    |||||||| |||||||    
T  10199345 aaataagtcaatccaa 10199330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 50319230 - 50319286
Alignment:
Q  324 cttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    |||||| |||||||||| ||||||| |||||||||||||| | || |||||||||||    
T  50319230 cttatgtataagctatttctataacaaaagataaaataaagtcaagttgttttcata 50319286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 37841943 - 37841989
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttc 377  Q
    |||||||||||||||||| || ||||||||||| | |||||||||||    
T  37841943 ataagctattcctataacaaatgataaaataaagttaaattgttttc 37841989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 38651559 - 38651485
Alignment:
Q  306 gtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    ||||||||||  | |||||||||| |||||||| | ||||||| ||||||||| |||| |  |||||||||||||    
T  38651559 gtgtttatcatgtaagtgcttatgtataagctaattctataacaaaagataaactaaagtcgaattgttttcata 38651485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 535
Target Start/End: Original strand, 37416904 - 37416957
Alignment:
Q  482 agtctcacaaatgcttatactattagatgagctcaaataagttaatccaaatag 535  Q
    ||||||||| |||||||| | | ||||| |||||||||||||||||| ||||||    
T  37416904 agtctcacagatgcttatgccactagataagctcaaataagttaatctaaatag 37416957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 379
Target Start/End: Complemental strand, 40358052 - 40357963
Alignment:
Q  290 taaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcat 379  Q
    ||||||| ||||| ||||| |||| | || ||||  |||| |||||||||| ||||||| |  ||||||||||| | |||||||||||||    
T  40358052 taaacaaattaattaagtgcttattatataagtgactatgtataagctatttctataacaatggataaaataaagtcaaattgttttcat 40357963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 44032147 - 44032074
Alignment:
Q  308 gtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||| || |||| ||||| ||||||  || ||||||| |||| ||||||||| | |||||||||||||||    
T  44032147 gtttatcatataagtgtttatgtataagccgtttctataacaaaagctaaaataaagtcaaattgttttcatat 44032074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 517
Target Start/End: Complemental strand, 45769733 - 45769692
Alignment:
Q  476 tcaattagtctcacaaatgcttatactattagatgagctcaa 517  Q
    ||||| |||||||||||||||||||||| ||||| |||||||    
T  45769733 tcaataagtctcacaaatgcttatactagtagataagctcaa 45769692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 47877080 - 47877117
Alignment:
Q  344 ataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  47877080 ataacaaaagataaaataaaatcaaattgttttcatat 47877117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 380
Target Start/End: Complemental strand, 48748731 - 48748659
Alignment:
Q  307 tgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    ||||||||| ||  ||||||||| |||||||||| ||||| | |||||| ||||||| | ||||||||||||||    
T  48748731 tgtttatcatatatgtgcttatgtataagctatttctata-caaaagatgaaataaagttaaattgttttcata 48748659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 2194491 - 2194451
Alignment:
Q  323 gcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    |||||||||||||||||| ||||||| | ||||||||||||    
T  2194491 gcttatgcataagctatttctataacaatagataaaataaa 2194451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 464 - 532
Target Start/End: Complemental strand, 3319935 - 3319867
Alignment:
Q  464 tcataagttctatcaattagtctcacaaatgcttatactattagatgagctcaaataagttaatccaaa 532  Q
    ||||||| ||| ||||| ||||||| || ||||| | ||| ||||| ||||||||||||| ||||||||    
T  3319935 tcataagctctttcaatcagtctcataattgcttttgctagtagataagctcaaataagtcaatccaaa 3319867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 4549802 - 4549858
Alignment:
Q  322 tgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttca 378  Q
    |||||||| | |||||||| ||||||| |||||||||||||| | ||||||| ||||    
T  4549802 tgcttatgtacaagctatttctataacaaaagataaaataaagttaaattgtcttca 4549858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 14737829 - 14737781
Alignment:
Q  332 taagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    |||| |||| ||||||| |||||||||||||| | ||||||||||||||    
T  14737829 taagttatttctataacaaaagataaaataaagtcaaattgttttcata 14737781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 23895275 - 23895331
Alignment:
Q  325 ttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||| |||||||||| ||||||| |||||||||||||| | ||| |||| ||||||    
T  23895275 ttatgtataagctatttctataacaaaagataaaataaattcaaactgttctcatat 23895331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 26293234 - 26293182
Alignment:
Q  328 tgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    ||||||||||||| ||||||| |||  ||||||||| | ||||||||||||||    
T  26293234 tgcataagctatttctataacaaaaagtaaaataaagtcaaattgttttcata 26293182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 33339588 - 33339516
Alignment:
Q  288 gataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaat 360  Q
    ||||||||| ||||| ||||| |||||| ||  ||| ||||| |||||||||| ||||| | |||||||||||    
T  33339588 gataaacaacttaattaagtggttatcatataggtgtttatgtataagctatttctataccaaaagataaaat 33339516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 36151636 - 36151584
Alignment:
Q  325 ttatgcataagctattcctataacgaaagataaaataaaataaaattgttttc 377  Q
    ||||| |||||||||| | ||||| |||||||||||||| | |||||||||||    
T  36151636 ttatgtataagctatttcaataacaaaagataaaataaagtcaaattgttttc 36151584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 46499990 - 46499934
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgtttt 376  Q
    |||||||||  |||||||||| ||||||  |||||||||||||| | ||||||||||    
T  46499990 agtgcttatctataagctatttctataagaaaagataaaataaagtcaaattgtttt 46499934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 49517015 - 49517063
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttcat 379  Q
    ||||| |||| ||||||| |||||||||||||| | |||||||||||||    
T  49517015 ataagttatttctataacaaaagataaaataaagtcaaattgttttcat 49517063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 1810445 - 1810378
Alignment:
Q  311 tatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||| || |||||||||||| |||||||| ||||||| ||||||||||||||||   |||||||||||||    
T  1810445 tatcatataagtgcttatgcaaaagctatttctataacaaaagataaaataaaat---attgttttcatat 1810378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 322 - 381
Target Start/End: Complemental strand, 29274363 - 29274304
Alignment:
Q  322 tgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||| |||||||||| ||||| | |||||||||||||| | |||||||||||||||    
T  29274363 tgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatat 29274304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 281973 - 281923
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||||||||||| |||||||||||||| | || ||||||||||||    
T  281973 ataagctattcctataacaaaagataaaataaagtcaacttgttttcatat 281923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 10452505 - 10452435
Alignment:
Q  311 tatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||| || |||||||||| |||||||||| ||||||| ||| |||||||||||| ||| | |||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatat 10452435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 24782004 - 24782054
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||| ||||||| ||||||||||| |||| |||||||||||||||    
T  24782004 ataagctatttctataacaaaagataaaatcaaatcaaattgttttcatat 24782054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 4006648 - 4006709
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||||||||| |||| ||||||| || ||||||||||| | |||||||||| ||||    
T  4006648 agtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatat 4006709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 4247808 - 4247731
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaa 359  Q
    |||||||||||||| ||  ||  |||||||||||  | |||||||||| |||||||||| ||||||| ||||||||||    
T  4247808 tgtttggataaacagttcgattgagtgtttatcatgtaagtgcttatgtataagctatttctataacaaaagataaaa 4247731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 8010259 - 8010319
Alignment:
Q  288 gataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataac 348  Q
    ||||||||| ||||| |||||||||||| || |||||||| | |||||||||| |||||||    
T  8010259 gataaacaacttaattaagtgtttatcatataagtgcttaggtataagctatttctataac 8010319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 461 - 533
Target Start/End: Complemental strand, 26559231 - 26559159
Alignment:
Q  461 ttttcataagttctatcaattagtctcacaaatgcttatactattagatgagctcaaataagttaatccaaat 533  Q
    ||||||||||||||  |||  |||||||||||||||||| | | ||| | | |||||||||||||||||||||    
T  26559231 ttttcataagttcttccaaacagtctcacaaatgcttatgccagtaggtaaactcaaataagttaatccaaat 26559159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 282 - 381
Target Start/End: Complemental strand, 9668159 - 9668060
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||||||||||||||||| ||  | |||| |||| || ||||||  ||||||||||  |||||| |||||||| ||| | |  ||||||||||||||    
T  9668159 tgtttggataaacaatttaattaaccgcttataacatcagcgcttatatataagctatttgtataacaaaagataacatagagtcgaattgttttcatat 9668060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 9093689 - 9093635
Alignment:
Q  323 gcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttc 377  Q
    ||||||| |||||||||| ||||| | |||||||||||||| | |||||||||||    
T  9093689 gcttatggataagctatttctatatcaaaagataaaataaagttaaattgttttc 9093635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 30537067 - 30537021
Alignment:
Q  335 gctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||| ||||||| |||||||||||||||| || ||||||||||||    
T  30537067 gctatttctataacaaaagataaaataaaattaatttgttttcatat 30537021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 535
Target Start/End: Original strand, 12111066 - 12111119
Alignment:
Q  482 agtctcacaaatgcttatactattagatgagctcaaataagttaatccaaatag 535  Q
    |||||| ||| ||||||| ||| ||||| ||||||||||||| |||||||||||    
T  12111066 agtctcgcaagtgcttatgctagtagataagctcaaataagtcaatccaaatag 12111119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 27890010 - 27889937
Alignment:
Q  289 ataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataa 362  Q
    |||||||| ||||| |||  ||||||| ||||||||||||| | ||| |||| ||||||| | |||||||||||    
T  27890010 ataaacaacttaattaagcatttatcatatgagtgcttatgtacaagttatttctataacaacagataaaataa 27889937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 24836330 - 24836278
Alignment:
Q  325 ttatgcataagctattcctataacgaaagataaaataaaataaaattgttttc 377  Q
    ||||| ||||| |||| ||||||| |||||||||||||| | |||||||||||    
T  24836330 ttatgtataagttatttctataacaaaagataaaataaagtcaaattgttttc 24836278  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 33068695 - 33068639
Alignment:
Q  322 tgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttca 378  Q
    |||||||| ||||| |||| ||||||| ||||||||||||| || ||| ||||||||    
T  33068695 tgcttatgtataagttatttctataacaaaagataaaataatatcaaactgttttca 33068639  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 281 - 365
Target Start/End: Original strand, 7936921 - 7937005
Alignment:
Q  281 atgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaat 365  Q
    |||||||||||||||| ||||| ||||| || | |||| |||||||||| |||| | ||| ||||||| |||||||||| |||||    
T  7936921 atgtttggataaacaacttaattaagtgcttttaacataagtgcttatgtataaaccatttctataacaaaagataaaagaaaat 7937005  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 11344420 - 11344360
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    |||||||||||||||| |||| ||||||| |||||||||| ||| | ||||||||||||||    
T  11344420 agtgcttatgcataagatatttctataacaaaagataaaagaaagtcaaattgttttcata 11344360  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 381
Target Start/End: Original strand, 3673725 - 3673802
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||| ||| || |||||||||| || || |||| ||||||| ||| |||||||||| | |||||||||||||||    
T  3673725 aagtgtttgtcatataagtgcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcatat 3673802  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 310 - 383
Target Start/End: Original strand, 35809857 - 35809929
Alignment:
Q  310 ttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatattt 383  Q
    |||||| || |||||||||| ||||| |||| | || || |||||||||||||||| |||||||||||||||||    
T  35809857 ttatcatataagtgcttatgtataagttatttccatgac-aaagataaaataaaatcaaattgttttcatattt 35809929  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 381
Target Start/End: Complemental strand, 17952876 - 17952776
Alignment:
Q  281 atgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    |||||||| |||| |||||||| |||   |||||| || || ||||||  |||||||||| ||||||| |||||||||||||| | ||| | ||||||||    
T  17952876 atgtttggttaaaaaatttaataaagcacttatcatataagagcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcata 17952777  T
Q  381 t 381  Q
    |    
T  17952776 t 17952776  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 442
Target Start/End: Original strand, 25609724 - 25609852
Alignment:
Q  314 cacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatatttaccatagtttgttttcagaaattataatga 413  Q
    ||||| |||||||||| |||||||||| ||||||  |||||||||||||| | || || ||||| |||   | |||  ||||||| |||||||||| |      
T  25609724 cacataagtgcttatgtataagctatttctataagaaaagataaaataaagtcaatttattttcgtataagctataagttgtttttagaaattatactag 25609823  T
Q  414 aaagtttatgaaaataagttgaaaacaac 442  Q
    |||||||| | ||| || |||||||||||    
T  25609824 aaagtttaaggaaagaaattgaaaacaac 25609852  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 36114659 - 36114603
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgtttt 376  Q
    ||||||||||||||| ||| | ||||||| |||||||||||||| | ||||||||||    
T  36114659 agtgcttatgcataacctagttctataacaaaagataaaataaagttaaattgtttt 36114603  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 381
Target Start/End: Complemental strand, 18962188 - 18962113
Alignment:
Q  306 gtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||||||  | |||||||||| || |||||||  |||||| |||||||||||||| | ||| |||||||||||    
T  18962188 gtgtttatcatgtaagtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatat 18962113  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 656902 - 656856
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttc 377  Q
    |||||||||| ||||||| |||||||||||| ||| |||||||||||    
T  656902 ataagctatttctataacaaaagataaaatataatcaaattgttttc 656856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 11393518 - 11393440
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaatt-gttttcatat 381  Q
    |||||||||||| || |||||||||  |||||||||| ||||| | ||||||| |||||| | ||||| ||||||||||    
T  11393518 aagtgtttatcatataagtgcttatctataagctatttctatatcaaaagatataataaattcaaattcgttttcatat 11393440  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 11410179 - 11410101
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaatt-gttttcatat 381  Q
    |||||||||||| || |||||||||  |||||||||| ||||| | ||||||| |||||| | ||||| ||||||||||    
T  11410179 aagtgtttatcatataagtgcttatctataagctatttctatatcaaaagatataataaattcaaattcgttttcatat 11410101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 532
Target Start/End: Complemental strand, 15370294 - 15370244
Alignment:
Q  482 agtctcacaaatgcttatactattagatgagctcaaataagttaatccaaa 532  Q
    |||||||||||||||||| | | ||||| ||||||||||||| ||||||||    
T  15370294 agtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaa 15370244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 32098442 - 32098384
Alignment:
Q  322 tgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcata 380  Q
    |||||||  |||||||||| ||||||| |||||||||||||| | ||| ||||||||||    
T  32098442 tgcttatatataagctatttctataacaaaagataaaataaagtcaaagtgttttcata 32098384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 40837553 - 40837503
Alignment:
Q  331 ataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||| ||||||| ||||||||| |||| | |||||||||||||||    
T  40837553 ataagctatttctataacaaaagataaattaaagtcaaattgttttcatat 40837503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 5133708 - 5133749
Alignment:
Q  322 tgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    |||||||| |||||||||| ||||||| ||||||||||||||    
T  5133708 tgcttatgtataagctatttctataacaaaagataaaataaa 5133749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 28902011 - 28902072
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||| ||||||||||  ||||||  ||| ||||||||||| ||| |||||||||||    
T  28902011 agtgcttatgtataagctatttttataacataagttaaaataaaattaaactgttttcatat 28902072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 35459828 - 35459901
Alignment:
Q  304 aagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttc 377  Q
    |||||||||||| || |||| || || ||||||||||  |||| | |||||||||||||| | |||||||||||    
T  35459828 aagtgtttatcatataagtgattttgtataagctatttgtataccaaaagataaaataaagtcaaattgttttc 35459901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 9477860 - 9477936
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtg-cttatgcataagctattcctataacgaaagataa 357  Q
    ||||||||||||||| ||||| ||||||||||  ||| ||||  || || |||||||||| ||||||| ||||||||    
T  9477860 tgtttggataaacaacttaattaagtgtttatagcataagtgatttctgtataagctatttctataacaaaagataa 9477936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 21280525 - 21280489
Alignment:
Q  324 cttatgcataagctattcctataacgaaagataaaat 360  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  21280525 cttatgcataagctatttctataccgaaagataaaat 21280489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 26484257 - 26484193
Alignment:
Q  283 gtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataa 347  Q
    |||||||||||||| ||||| ||   ||||||| || |||||||||| |||||||||| ||||||    
T  26484257 gtttggataaacaacttaattaatcatttatcatataagtgcttatggataagctatttctataa 26484193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 486 - 530
Target Start/End: Complemental strand, 33931537 - 33931493
Alignment:
Q  486 tcacaaatgcttatactattagatgagctcaaataagttaatcca 530  Q
    |||||| ||||||| ||||||| | ||||||||||||||||||||    
T  33931537 tcacaagtgcttatgctattaggtaagctcaaataagttaatcca 33931493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 35329980 - 35329912
Alignment:
Q  295 aatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    |||| ||| |||||||||||| || |||| |||||||||| ||||| | |||||  |||||||||||||    
T  35329980 aattaaattaagtgtttatcatataagtgtttatgcataaactatttccataacataagataaaataaa 35329912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 282 - 381
Target Start/End: Complemental strand, 40722649 - 40722552
Alignment:
Q  282 tgtttggataaacaatttaatgaagtgtttatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    ||||||||||||||| ||||| ||||| ||||   ||| ||||||||||||||||| ||  ||||||  || |||||||||| |  || |||||||||||    
T  40722649 tgtttggataaacaacttaatcaagtgcttattgtatgtgtgcttatgcataagctttttttataac--aaaataaaataaagtcgaactgttttcatat 40722552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 44064393 - 44064429
Alignment:
Q  324 cttatgcataagctattcctataacgaaagataaaat 360  Q
    ||||||||||||||| | |||||||||||||||||||    
T  44064393 cttatgcataagctacttctataacgaaagataaaat 44064429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 27510 - 27571
Alignment:
Q  320 agtgcttatgcataagctattcctataacgaaagataaaataaaataaaattgttttcatat 381  Q
    |||||||||| ||||| |||| |||||||  ||||||||||||| | |||||||||||||||    
T  27510 agtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatat 27571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 1219 - 1167
Alignment:
Q  311 tatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    ||||| || |||||||||| |||||||||| ||||||| ||||||||||||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaa 1167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 2756 - 2808
Alignment:
Q  311 tatcacatgagtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    ||||| || |||||||||| |||||||||| ||||||| ||||||||||||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaa 2808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 160107 - 160065
Alignment:
Q  321 gtgcttatgcataagctattcctataacgaaagataaaataaa 363  Q
    |||||||||||||| ||||||||||| | ||||||||||||||    
T  160107 gtgcttatgcataaactattcctatagcaaaagataaaataaa 160065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 3981 - 4017
Alignment:
Q  277 gactatgtttggataaacaatttaatgaagtgtttat 313  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  3981 gactctgtttggataaacaacttaatgaagtgtttat 4017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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