View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_low_20 (Length: 330)
Name: NF16435_low_20
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 46 - 326
Target Start/End: Original strand, 26721858 - 26722138
Alignment:
| Q |
46 |
atctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaa |
145 |
Q |
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| T |
26721858 |
atctcattctcttcttacttttaatttcattttattctgtaataatgataacgagattgtttctatctacactttataggttctacaaatatggttcaaa |
26721957 |
T |
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| Q |
146 |
gaagaaaaatcatgagccttggattatgatttgaggttgtaatttgagaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcacta |
245 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721958 |
gaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcacta |
26722057 |
T |
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| Q |
246 |
ctcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctccaattaattttttcttctcactc |
326 |
Q |
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| T |
26722058 |
ctcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactc |
26722138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 46 - 326
Target Start/End: Complemental strand, 45117051 - 45116784
Alignment:
| Q |
46 |
atctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaa |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45117051 |
atctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaa |
45116952 |
T |
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| Q |
146 |
gaagaaaaatcatgagccttggattatgatttgaggttgtaatttgagaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcacta |
245 |
Q |
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| T |
45116951 |
gaagaaaaaccatgagccttggattatgatttgag-------------aaaatggtttaagactctatttgttgtgtaatttccatcaatgctctcacta |
45116865 |
T |
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| Q |
246 |
ctcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctccaattaattttttcttctcactc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45116864 |
ctcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactc |
45116784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 46 - 326
Target Start/End: Original strand, 2987327 - 2987594
Alignment:
| Q |
46 |
atctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttataggttctgcaaatatggttcaaa |
145 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2987327 |
atctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctatactttataggttctgcaaatatggttcaaa |
2987426 |
T |
|
| Q |
146 |
gaagaaaaatcatgagccttggattatgatttgaggttgtaatttgagaaaatggttcaagactctatttgttgtgtaatttccatcaatgctctcacta |
245 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||| |||||||| |
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| T |
2987427 |
gaagaaaaaccatgagccttggattatg-------------atttgagaaaatggtttaatactctatttgttgtgtaatttccatcaatgttctcacta |
2987513 |
T |
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| Q |
246 |
ctcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctccaattaattttttcttctcactc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2987514 |
ctcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctcactc |
2987594 |
T |
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