View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_low_21 (Length: 308)
Name: NF16435_low_21
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 94 - 290
Target Start/End: Complemental strand, 31182196 - 31182000
Alignment:
| Q |
94 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcttatgtagat |
193 |
Q |
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| T |
31182196 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcctatgtagat |
31182097 |
T |
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| Q |
194 |
tttatgaaaactttcaagtaacttaaagtttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagcttgg |
290 |
Q |
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| T |
31182096 |
tttatgaaaactttcaagtaacttaaagtttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagcttgg |
31182000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 94 - 290
Target Start/End: Complemental strand, 31201237 - 31201041
Alignment:
| Q |
94 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcttatgtagat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31201237 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcctatgtagat |
31201138 |
T |
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| Q |
194 |
tttatgaaaactttcaagtaacttaaagtttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagcttgg |
290 |
Q |
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| T |
31201137 |
tttatgaaaactttcaagtaacttaaagtttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagcttgg |
31201041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 94 - 290
Target Start/End: Complemental strand, 31219933 - 31219736
Alignment:
| Q |
94 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcttatgtagat |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| || |
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| T |
31219933 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcaccatgcaaaaattgtaagtaattttcccatgtaaat |
31219834 |
T |
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| Q |
194 |
tttatgaaaactttcaagtaactt-aaagtttgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagcttgg |
290 |
Q |
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|||||||||| ||||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
31219833 |
tttatgaaaattttcaaggaacttaaaagtttgaaaccctaaatgcataggattctgaagttcaatcagttatctggagatcttccaccggagcttgg |
31219736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 290
Target Start/End: Complemental strand, 31247313 - 31247114
Alignment:
| Q |
94 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcttatgtagat |
193 |
Q |
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||||||||||| ||||||| || ||||| ||| |||| || ||||| |||||||| |||| ||| || ||| ||||||||||||| ||||| | ||| |
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| T |
31247313 |
gacagttcactattaggaaatcgtttaactggtccaattccaaaagaacttggaaaaatcatcaccctgaaaagcttgtaagtaattttcttatttcgat |
31247214 |
T |
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| Q |
194 |
tttatgaaaactt-tcaagtaacttaaagtt--tgatacactaaatgcataggattctgaagttcaatcagttatctggagagcttccaccagagcttgg |
290 |
Q |
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||| |||||| | ||||| |||||| | || ||| || ||||||||||| |||| |||||||||| ||||||||| ||||||| || |||||||| |
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| T |
31247213 |
tttttgaaaattgctcaaggaacttataattattgaaacttgaaatgcatagggttctagagttcaatcaattatctggacagcttcctccggagcttgg |
31247114 |
T |
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