View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16435_low_22 (Length: 306)

Name: NF16435_low_22
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16435_low_22
NF16435_low_22
[»] chr2 (2 HSPs)
chr2 (78-290)||(28597662-28597874)
chr2 (3-73)||(28597527-28597597)
[»] chr7 (2 HSPs)
chr7 (82-289)||(2679524-2679740)
chr7 (3-71)||(2679810-2679878)
[»] chr8 (3 HSPs)
chr8 (3-73)||(4330684-4330754)
chr8 (82-143)||(4330823-4330884)
chr8 (233-287)||(4331146-4331201)
[»] scaffold0211 (2 HSPs)
scaffold0211 (205-289)||(22845-22929)
scaffold0211 (23-71)||(22594-22642)
[»] chr6 (5 HSPs)
chr6 (14-71)||(28576940-28576997)
chr6 (88-142)||(28576809-28576863)
chr6 (3-71)||(32289067-32289135)
chr6 (85-156)||(32288925-32288995)
chr6 (31-71)||(334259-334299)
[»] chr4 (1 HSPs)
chr4 (31-71)||(39937326-39937366)
[»] chr1 (1 HSPs)
chr1 (88-126)||(48015676-48015714)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 78 - 290
Target Start/End: Original strand, 28597662 - 28597874
Alignment:
Q  78 ttttttatgcttaaataatatgttatttctctcattccacataacccaagcgcaagataatcaaattagctacataaaaaatcggtgcacttgcaaccca 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||| ||||||||||||||    
T  28597662 ttttttatgcttaaataatatgttatttctctcattccacataacccaagcgcaagataggcaaattagctacataaaagatcggcgcacttgcaaccca 28597761  T
Q  178 cttgaggcatcaacaaagtcgtcttgtatgttatacaaatcagctgtaaagaatccaatccactcgcgaactaaattcctaagagaagcaaatatagtgc 277  Q
    |||||||||| |||||||||||||||||||| ||||  ||||||||||||||||||||||||| || |||||||||||| ||||||||| ||||||||||    
T  28597762 cttgaggcatgaacaaagtcgtcttgtatgtgatacggatcagctgtaaagaatccaatccacccgtgaactaaattccaaagagaagcgaatatagtgc 28597861  T
Q  278 aggatggaaacat 290  Q
    ||||| |||||||    
T  28597862 aggatagaaacat 28597874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 28597527 - 28597597
Alignment:
Q  3 agattagtcaatacccaaagaaacaatcgggttcgaccactaaatatgaaagcttaaactaaaattaacgt 73  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  28597527 agattagtcaatacccaaacaaacaatcgagttcgaccaccaaatatgaaagcttaaactaaaattaacgt 28597597  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 289
Target Start/End: Complemental strand, 2679740 - 2679524
Alignment:
Q  82 ttatgcttaaataatatgttatttctctcattccacataacccaagcgcaagataatcaaattagctacataaaaaatcggtgcacttgcaacccacttg 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| || ||||| ||| |  || |||||   ||||||| |     
T  2679740 ttatgcttaaataatatgttatttctctcattccacataacccaagcgcaagatagccaaataagttacatgaaagaaaggcgcactcataacccaccta 2679641  T
Q  182 aggca---------tcaacaaagtcgtcttgtatgttatacaaatcagctgtaaagaatccaatccactcgcgaactaaattcctaagagaagcaaatat 272  Q
    | | |         | |||||||| ||||||||||| ||| | ||||| |||||||| |||||||||||| | ||||||| ||| |||||||||||| ||    
T  2679640 atgaatgaacaaactgaacaaagtggtcttgtatgtgatatagatcagttgtaaagactccaatccactcccaaactaaaatccaaagagaagcaaaaat 2679541  T
Q  273 agtgcaggatggaaaca 289  Q
      |||||||| ||||||    
T  2679540 tatgcaggatagaaaca 2679524  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 2679878 - 2679810
Alignment:
Q  3 agattagtcaatacccaaagaaacaatcgggttcgaccactaaatatgaaagcttaaactaaaattaac 71  Q
    ||||||| | ||||||||| |||||||||||||| || || ||||||||||||||||||||||||||||    
T  2679878 agattagccgatacccaaacaaacaatcgggttcaactaccaaatatgaaagcttaaactaaaattaac 2679810  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 4330684 - 4330754
Alignment:
Q  3 agattagtcaatacccaaagaaacaatcgggttcgaccactaaatatgaaagcttaaactaaaattaacgt 73  Q
    ||||||| |||||| |||| ||||||||| |||||||||| |||||||||||||||||| |||||||||||    
T  4330684 agattagccaatactcaaacaaacaatcgagttcgaccaccaaatatgaaagcttaaaccaaaattaacgt 4330754  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 4330823 - 4330884
Alignment:
Q  82 ttatgcttaaataatatgttatttctctcattccacataacccaagcgcaagataatcaaat 143  Q
    ||||||||||| |||||||||||||||| |||| ||||||||||||| |||||||| |||||    
T  4330823 ttatgcttaaacaatatgttatttctcttattctacataacccaagcacaagataaccaaat 4330884  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 4331146 - 4331201
Alignment:
Q  233 caatccactcgcgaactaaattcctaagagaagc-aaatatagtgcaggatggaaa 287  Q
    |||||||||| ||||||||||||| ||||||||| ||| |||||||||||| ||||    
T  4331146 caatccactcccgaactaaattccaaagagaagcaaaaaatagtgcaggatagaaa 4331201  T

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Target: scaffold0211 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 22845 - 22929
Alignment:
Q  205 atgttatacaaatcagctgtaaagaatccaatccactcgcgaactaaattcctaagagaagcaaatatagtgcaggatggaaaca 289  Q
    |||| ||||| ||||||||||||||||| |||| |||| |||||||| |||| |||||||| |||||||||| ||||| ||||||    
T  22845 atgtgatacagatcagctgtaaagaatcaaatcgactcccgaactaatttccaaagagaagtaaatatagtgtaggatagaaaca 22929  T

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Target: scaffold0211; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 22594 - 22642
Alignment:
Q  23 aaacaatcgggttcgaccactaaatatgaaagcttaaactaaaattaac 71  Q
    ||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  22594 aaacaatcgtgttcgaccaccaaatatgaaagcttaaactaaatttaac 22642  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 28576997 - 28576940
Alignment:
Q  14 tacccaaagaaacaatcgggttcgaccactaaatatgaaagcttaaactaaaattaac 71  Q
    |||||||| || |||  |||||||||||||||||||||||||||||||||||||||||    
T  28576997 tacccaaacaagcaaaagggttcgaccactaaatatgaaagcttaaactaaaattaac 28576940  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 28576863 - 28576809
Alignment:
Q  88 ttaaataatatgttatttctctcattccacataacccaagcgcaagataatcaaa 142  Q
    |||||||||||||| |||||||||||||||||||||||| | ||||||| |||||    
T  28576863 ttaaataatatgttgtttctctcattccacataacccaatcacaagatagtcaaa 28576809  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 32289135 - 32289067
Alignment:
Q  3 agattagtcaatacccaaagaaacaatcgggttcgaccactaaatatgaaagcttaaactaaaattaac 71  Q
    ||||| ||| ||||||||| |||||||||||||||| ||| |||||| |||| ||||||||| ||||||    
T  32289135 agattggtcgatacccaaacaaacaatcgggttcgaacaccaaatataaaagtttaaactaatattaac 32289067  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 32288995 - 32288925
Alignment:
Q  85 tgcttaaataatatgttatttctctcattccacataacccaagcgcaagataatcaaattagctacataaaa 156  Q
    |||||||||||| |||||||||| |||||||||||| | ||| |||||||||| ||||| || | |||||||    
T  32288995 tgcttaaataatctgttatttct-tcattccacatagctcaaacgcaagataaccaaataagttgcataaaa 32288925  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 334299 - 334259
Alignment:
Q  31 gggttcgaccactaaatatgaaagcttaaactaaaattaac 71  Q
    |||||||||||| ||||||||||| |||| |||||||||||    
T  334299 gggttcgaccaccaaatatgaaagtttaagctaaaattaac 334259  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 39937366 - 39937326
Alignment:
Q  31 gggttcgaccactaaatatgaaagcttaaactaaaattaac 71  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  39937366 gggttcgaccaccaaatatgaaagcttaaactaaaattaac 39937326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 48015714 - 48015676
Alignment:
Q  88 ttaaataatatgttatttctctcattccacataacccaa 126  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  48015714 ttaaataatatgttatttctcacattccagataacccaa 48015676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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