View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_low_28 (Length: 272)
Name: NF16435_low_28
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 29001568 - 29001799
Alignment:
| Q |
18 |
catgtctataggaatcatctcaactcttattttgttcaaagttgcaataattccatacacatttgatcttgttctctcaactgttcctcaactttggttc |
117 |
Q |
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| T |
29001568 |
catgtctataggaatcatctcaactcttattttgttcaaagttgcaataattccatacacatttgatcttgttctttcaactcttcctcaactttggttc |
29001667 |
T |
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| Q |
118 |
tcaataagaacatggtttacaatccctttcctttacatcattgttaacttcatcatcattaccattgtagcttcttcaaacttctcccacaaaagcaata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29001668 |
tcaataagaacatggtttacaatccctttcctttacatcattgttaacttcatcatcattaccattgtattttcttcaaacttctcccacaaaagcaata |
29001767 |
T |
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| Q |
218 |
gcagcataactttttctgatctcaagcaaaca |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29001768 |
gcagcataactttttctgatctcaagcaaaca |
29001799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 28961888 - 28962059
Alignment:
| Q |
25 |
ataggaatcatctcaactcttattttgttcaaagttgcaataattccatacacatttgatcttgttctctcaactgttcctcaactttggttctcaataa |
124 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
28961888 |
ataggaatcatttcaactcttattttgttcaaagttgcaataattccgtacacatttgatcttgttctttcaactcttcctcaactttggttctcaataa |
28961987 |
T |
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| Q |
125 |
gaacatggtttacaatccctttcctttacatcattgttaacttcatcatcattaccattgtagcttcttcaa |
196 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
28961988 |
gaacatggtttacacttcctttcctttacatcattgttaacttcatcattattatcattgtagcttcttcaa |
28962059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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