View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_low_3 (Length: 672)
Name: NF16435_low_3
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 611; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 18 - 659
Target Start/End: Complemental strand, 39948724 - 39948082
Alignment:
| Q |
18 |
aactaaatgcagaacattgctaccttctttgtctttgactgataacaatcgtaatctatggtttcctctcactaactttactaggattttcaaagcctcc |
117 |
Q |
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| T |
39948724 |
aactaaatgcagaacattgttaccttctttgtctttgactgataagaatcgtaatctatggtttcctctcactaactttactaggattttcaaagcctcc |
39948625 |
T |
|
| Q |
118 |
agatggttatagcgaacacacaagtgtagaatg-aaccatgatcatcagtctcaaacatcaccttgatgatttctgtttctggcatgatactattcaatt |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39948624 |
agatggttatagcgaacacacaagtgtagaatggaaccatgatcatcagtctcaaacatcaccttgatgatttctgtttctggcatgacactattcaatt |
39948525 |
T |
|
| Q |
217 |
ccttaatggcttccacacgtcctctcattgcagcaaagtggattggaatcttgtcatctttgtcccttatgaagcaagtttttgaatttgtcaacaatat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39948524 |
ccttaatggcttccacacgtcctctcattgcagcaaagtggattggaatcttgtcatctttgtcccttatgaagcaagtttttgaatttgtcaacaatat |
39948425 |
T |
|
| Q |
317 |
tgctctgacaatcttagtgtacccttttgcagaaaccaaatgaagagggcaacgtccttctaagttcacttcagatgctaaattgggatctatatcaaga |
416 |
Q |
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| T |
39948424 |
tgctctgacaatcttagtgtacctttttgcagaaaccaaatgaagagggcaacgtccttctaagttcacttcagatgctaaattgggatctatatcaaga |
39948325 |
T |
|
| Q |
417 |
agaatctgacaaaactcgaagtttccaagcaaagaggctatgtgcaatggtgttatagagaagggatacaatgaaactttgcttaaaatgagagggtttc |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39948324 |
agaatctgacaaaactcgaagtttccaagcaaagaggctatgtgcaatggtgttatagagaagggatacaatgaaactttgctcaaaatgagagggtttc |
39948225 |
T |
|
| Q |
517 |
tttggatcaatgttcttaaggaacttacacttctatttaatgatgcattgtagagctctctcattgtgtcatcctgtaaaatctccatttaataaatatt |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39948224 |
tttggatcaatgttcttaaggaacttacacttctatttaatgatgcattgtagagctctctcatcgtgtcatcctgtaaaatctccatttaataaatatt |
39948125 |
T |
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| Q |
617 |
gaacaacaaaccaagtaatattgatgagtcttttgaagtgttc |
659 |
Q |
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| T |
39948124 |
gaacaacaaaccaagtaatattgatgagtcttttgaagtgttc |
39948082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 97 - 581
Target Start/End: Complemental strand, 39943776 - 39943291
Alignment:
| Q |
97 |
actaggattttcaaagcctccagatggttatagcgaacacacaagtgtagaatg-aaccatgatcatcagtctcaaacatcaccttgatgatttctgttt |
195 |
Q |
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|||||||||||||| ||||| || || |||||| |||||||||||| | |||| |||| ||||||||| ||||| ||||||| | || ||||||||| |
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| T |
39943776 |
actaggattttcaatgcctctaggtgattatagaaaacacacaagtgcaaaatggaaccgtgatcatcaatctcagccatcaccctaatagtttctgttt |
39943677 |
T |
|
| Q |
196 |
ctggcatgatactattcaattccttaatggcttccacacgtcctctcattgcagcaaagtggattggaatcttgtcatctttgtcccttatgaagcaagt |
295 |
Q |
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| | ||| ||| |||| ||||| |||| | | ||| ||||||||||| ||||||| |||| |||| |||||||||||||| | || |||||||| |
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| T |
39943676 |
ccgacattgcacttatcaactccttgatggttcctacatgtcctctcattacagcaaaatggagaggaagtttgtcatctttgtcgcgaatcaagcaagt |
39943577 |
T |
|
| Q |
296 |
ttttgaatttgtcaacaatattgctctgacaatcttagtgtacccttttgcagaaaccaaatgaagagggcaacgtccttctaagttcacttcagatgct |
395 |
Q |
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|| | || ||| ||||| | ||| | || || | | ||| ||||||||||||| | | |||||||| |||| |||||||| |||||||||||| |||| |
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| T |
39943576 |
ttcttgatctgttaacaacaaagctttcactatttcaatgtgcccttttgcagaagctagatgaagagcgcaatgtccttctgagttcacttcagctgct |
39943477 |
T |
|
| Q |
396 |
aaattgggatctatatcaagaagaatctgacaaaactcgaagtttccaagcaaagaggctatgtgcaatggtgttatagagaagggatacaatgaaactt |
495 |
Q |
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|| ||||||| ||| ||||||||||| ||||| || || || | |||||| ||||| |||||||| ||||| ||| |||||| ||||| | ||||||| |
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| T |
39943476 |
aagttgggatttatgtcaagaagaatttgacataattctaaatgtccaagtaaagaagctatgtgtaatggggtttcagagaatggatagagtgaaactc |
39943377 |
T |
|
| Q |
496 |
tgcttaaaatgagagggtttctttggatcaatgttcttaaggaacttacacttctatttaatgatgcattgtagagctctctcatt |
581 |
Q |
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| |||| ||| ||||||| | ||||||| | || | ||||| |||||||| || ||||||||||||| ||||| | ||||||| |
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| T |
39943376 |
tacttagaattagagggtctttttggataagtgcttttaagctacttacacatccttttaatgatgcatcatagaggtttctcatt |
39943291 |
T |
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