View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_low_31 (Length: 252)
Name: NF16435_low_31
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_31 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 64 - 252
Target Start/End: Original strand, 47560740 - 47560935
Alignment:
| Q |
64 |
aaattcaaaaagctcaaagagaactcagatttactataagaaggatattgttggagtgttgatgtaaacaaataatctactagttgtcggaagaagatgt |
163 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
47560740 |
aaattcaaaaagctcaaagagaactcagatttgctagaagaaggatattgttggagtgctgatataaacaaataatctactagttgtcggaagaagatgt |
47560839 |
T |
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| Q |
164 |
gtttcagtgttgattttg-------nnnnnnnnncgattttgttgatggagattgatggacgaccaattgctgtaacataggtagcttgaatgggt |
252 |
Q |
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| T |
47560840 |
gtttcagtgttgattttgaaaagaaaaaaaaaaacgattttgttgatggagattgatggacgtcgaattgttgtaacataggtggcttgaatgggt |
47560935 |
T |
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