View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_low_32 (Length: 251)
Name: NF16435_low_32
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 46092140 - 46091924
Alignment:
| Q |
20 |
ctttctgagcatatttttctgaatcagttggtggcataccctgtgaagcagcatctacaagagcagataggattgcattatctcttgctttttcaacatg |
119 |
Q |
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| T |
46092140 |
ctttctgagcatatttttctgaatcagttggtggcataccctgtgaagcagcatctacaagagcagataggattgcattatctcttgctttttcaacatg |
46092041 |
T |
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| Q |
120 |
agaagatctaatattgttagcatagagcttcacactttccttgaccccacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttc |
219 |
Q |
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| T |
46092040 |
agaagatctaatattgttagcatagagcttcacactttccttgaccccacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttc |
46091941 |
T |
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| Q |
220 |
ccacttttggatgatgt |
236 |
Q |
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| T |
46091940 |
ccacttttggatgatgt |
46091924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 46087036 - 46086824
Alignment:
| Q |
21 |
tttctgagcatatttttctgaatcagttggtggcataccctgtgaagcagcatctacaagagcagataggattgcattatctcttgctttttcaacatga |
120 |
Q |
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| T |
46087036 |
tttctgcgcatgtttttctgaaacaattggcgacataccctgtgaagcagcatcaacaagagcagattggattgcatcatgtcttgctttttcaacatga |
46086937 |
T |
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| Q |
121 |
gaagatctaatattgttagcatagagcttcacactttccttgaccccacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttcc |
220 |
Q |
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| T |
46086936 |
gcagatctaatattgttaacatagagcttcacactttctttaaccccacatgctaaacttccagagcccaaatcaaagcaatttaataatgtaaacttcc |
46086837 |
T |
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| Q |
221 |
cacttttggatga |
233 |
Q |
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| T |
46086836 |
cacttttggatga |
46086824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 233
Target Start/End: Complemental strand, 37476647 - 37476517
Alignment:
| Q |
103 |
cttgctttttcaacatgagaagatctaatattgttagcatagagcttcacactttccttgaccccacatgctaaagttccagagcccatatcaaagcaat |
202 |
Q |
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||||||||||||||||||| |||||||||| ||| | |||||| || || | ||| ||||| ||||||| || |||||||| ||||| ||||| || | |
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| T |
37476647 |
cttgctttttcaacatgagtagatctaatactgtaaaaatagagtttgacgccttctttgacagcacatgccaacgttccagaacccatgtcaaaacagt |
37476548 |
T |
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| Q |
203 |
ttaagaatgtaaacttcccacttttggatga |
233 |
Q |
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| T |
37476547 |
ttaataatgtgaactttccactctgggatga |
37476517 |
T |
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