View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16435_low_34 (Length: 244)

Name: NF16435_low_34
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16435_low_34
NF16435_low_34
[»] chr7 (21 HSPs)
chr7 (13-149)||(17503245-17503381)
chr7 (13-149)||(17549833-17549969)
chr7 (13-130)||(19735589-19735706)
chr7 (29-123)||(1964227-1964321)
chr7 (38-144)||(8352633-8352738)
chr7 (60-149)||(2842562-2842651)
chr7 (15-149)||(8515546-8515681)
chr7 (61-149)||(8488713-8488801)
chr7 (58-161)||(48294026-48294132)
chr7 (57-161)||(1837760-1837867)
chr7 (60-169)||(584070-584182)
chr7 (58-147)||(25173480-25173569)
chr7 (60-149)||(44592100-44592189)
chr7 (58-149)||(27399762-27399853)
chr7 (61-149)||(38974813-38974900)
chr7 (58-136)||(21294841-21294919)
chr7 (60-149)||(48557962-48558050)
chr7 (58-173)||(48767846-48767964)
chr7 (58-149)||(8055305-8055396)
chr7 (60-127)||(43786686-43786753)
chr7 (58-135)||(3641570-3641647)
[»] chr1 (22 HSPs)
chr1 (13-149)||(46688759-46688893)
chr1 (13-96)||(5939776-5939859)
chr1 (13-149)||(28522879-28523015)
chr1 (13-105)||(50011719-50011816)
chr1 (15-149)||(26991775-26991914)
chr1 (60-149)||(30627134-30627223)
chr1 (60-149)||(45467983-45468072)
chr1 (58-135)||(23082429-23082506)
chr1 (60-149)||(49650119-49650208)
chr1 (58-149)||(6597462-6597553)
chr1 (58-149)||(27163054-27163145)
chr1 (85-149)||(39092967-39093031)
chr1 (13-60)||(15456831-15456878)
chr1 (15-149)||(35718836-35718975)
chr1 (57-123)||(38790605-38790671)
chr1 (58-149)||(2356231-2356323)
chr1 (98-135)||(22767175-22767212)
chr1 (75-127)||(37586495-37586547)
chr1 (14-61)||(31437069-31437116)
chr1 (60-118)||(47675909-47675967)
chr1 (68-137)||(44343422-44343491)
chr1 (115-148)||(50011647-50011680)
[»] chr2 (20 HSPs)
chr2 (14-149)||(25749880-25750014)
chr2 (13-149)||(42029584-42029719)
chr2 (58-149)||(21848228-21848319)
chr2 (13-90)||(27957505-27957582)
chr2 (57-149)||(37456044-37456136)
chr2 (75-135)||(44059281-44059341)
chr2 (58-135)||(2968869-2968946)
chr2 (60-148)||(10624826-10624914)
chr2 (57-149)||(27559033-27559125)
chr2 (60-149)||(28967600-28967689)
chr2 (13-66)||(39446255-39446308)
chr2 (58-134)||(37847690-37847766)
chr2 (58-137)||(3703501-3703580)
chr2 (58-149)||(12671787-12671878)
chr2 (60-130)||(12863601-12863671)
chr2 (11-61)||(21848576-21848626)
chr2 (85-173)||(11916161-11916247)
chr2 (60-149)||(12184735-12184823)
chr2 (85-149)||(39446348-39446410)
chr2 (13-61)||(37847354-37847402)
[»] scaffold0110 (3 HSPs)
scaffold0110 (49-154)||(13663-13769)
scaffold0110 (49-154)||(21400-21506)
scaffold0110 (183-230)||(21924-21971)
[»] chr3 (24 HSPs)
chr3 (13-173)||(25701529-25701692)
chr3 (13-149)||(47142712-47142848)
chr3 (58-148)||(1559590-1559680)
chr3 (58-149)||(31833957-31834048)
chr3 (58-149)||(32552306-32552397)
chr3 (60-169)||(19611149-19611261)
chr3 (58-135)||(1151610-1151687)
chr3 (57-161)||(23059103-23059210)
chr3 (60-149)||(55222401-55222490)
chr3 (48-149)||(46981819-46981920)
chr3 (13-93)||(32721914-32721994)
chr3 (98-173)||(38585977-38586055)
chr3 (58-144)||(37526766-37526851)
chr3 (43-112)||(7325564-7325633)
chr3 (10-90)||(40242603-40242684)
chr3 (59-144)||(14903368-14903453)
chr3 (103-147)||(1294572-1294616)
chr3 (59-149)||(5992202-5992285)
chr3 (59-138)||(3935755-3935834)
chr3 (62-149)||(13778185-13778271)
chr3 (75-169)||(28131342-28131439)
chr3 (102-149)||(48098387-48098434)
chr3 (14-66)||(1559900-1559952)
chr3 (17-61)||(28131252-28131296)
[»] chr6 (7 HSPs)
chr6 (13-149)||(27753110-27753246)
chr6 (13-149)||(29465298-29465434)
chr6 (13-149)||(31766425-31766560)
chr6 (58-149)||(6812053-6812144)
chr6 (57-149)||(12919069-12919161)
chr6 (98-149)||(17096023-17096074)
chr6 (60-123)||(19687610-19687673)
[»] chr5 (11 HSPs)
chr5 (23-144)||(4898156-4898278)
chr5 (58-149)||(31066332-31066423)
chr5 (58-148)||(565353-565443)
chr5 (58-169)||(31046367-31046481)
chr5 (58-149)||(4396221-4396312)
chr5 (59-149)||(8516926-8517016)
chr5 (99-148)||(15958740-15958789)
chr5 (58-149)||(12883183-12883274)
chr5 (58-146)||(30312968-30313056)
chr5 (58-123)||(30350411-30350476)
chr5 (61-135)||(2553196-2553270)
[»] chr8 (17 HSPs)
chr8 (58-173)||(7177034-7177152)
chr8 (58-149)||(22800576-22800667)
chr8 (60-149)||(1581489-1581578)
chr8 (60-149)||(14523171-14523260)
chr8 (58-149)||(11989717-11989808)
chr8 (61-135)||(12795955-12796029)
chr8 (58-149)||(8693032-8693123)
chr8 (99-149)||(5423517-5423567)
chr8 (60-149)||(12532328-12532417)
chr8 (15-123)||(43976594-43976707)
chr8 (59-149)||(13282128-13282221)
chr8 (17-61)||(12796294-12796338)
chr8 (13-61)||(22800695-22800743)
chr8 (13-58)||(45251232-45251277)
chr8 (17-61)||(7177375-7177419)
chr8 (13-61)||(13282049-13282097)
chr8 (13-61)||(41438123-41438171)
[»] chr4 (24 HSPs)
chr4 (13-149)||(37450776-37450915)
chr4 (17-149)||(56397091-56397223)
chr4 (15-169)||(44991744-44991906)
chr4 (60-149)||(12191524-12191613)
chr4 (57-161)||(13678608-13678715)
chr4 (58-147)||(38068088-38068177)
chr4 (60-169)||(51175526-51175638)
chr4 (58-135)||(36904174-36904251)
chr4 (57-149)||(5744804-5744896)
chr4 (58-149)||(27064454-27064545)
chr4 (58-149)||(27085558-27085649)
chr4 (13-137)||(4711545-4711665)
chr4 (59-161)||(38168122-38168227)
chr4 (15-169)||(38068459-38068627)
chr4 (65-169)||(17058793-17058900)
chr4 (15-136)||(40445717-40445843)
chr4 (57-133)||(13665782-13665858)
chr4 (57-144)||(30482923-30483010)
chr4 (58-135)||(19853994-19854071)
chr4 (13-91)||(49551789-49551867)
chr4 (58-148)||(56228205-56228294)
chr4 (99-144)||(31767838-31767883)
chr4 (99-148)||(45832132-45832181)
chr4 (68-124)||(34929264-34929320)
[»] scaffold0568 (1 HSPs)
scaffold0568 (65-169)||(726-833)
[»] scaffold0086 (1 HSPs)
scaffold0086 (60-135)||(33242-33317)
[»] scaffold0020 (1 HSPs)
scaffold0020 (60-137)||(11490-11567)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 17503381 - 17503245
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||  ||||||||||||||    
T  17503381 gaagtaataaactatgtactggttggtcccacttgcaaaagaagtaataaattatttttgtataattatgtaaagttactgggacttatttaagtatttt 17503282  T
Q  113 ccattggagtccttattagtgtattgtcattggagtc 149  Q
      |||||||||||||||||||||||||||||||||||    
T  17503281 ttattggagtccttattagtgtattgtcattggagtc 17503245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 17549833 - 17549969
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||  ||||||||||||||    
T  17549833 gaagtaataaactatgtactggttggtcccacttgcaaaagaagtaataaattatttttgtataattatgtaaagttactgggacttatttaagtatttt 17549932  T
Q  113 ccattggagtccttattagtgtattgtcattggagtc 149  Q
      |||||||||||||||||||||||||||||||||||    
T  17549933 ttattggagtccttattagtgtattgtcattggagtc 17549969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 19735589 - 19735706
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||| |||    
T  19735589 gaagtaataaaatatgtactggttggtctcacttgtaaaagaagtaataaattatttttgtataatgatataaagttagtgagacctatttaagtacttt 19735688  T
Q  113 ccattggagtccttatta 130  Q
      |||||| |||||||||    
T  19735689 ttattggattccttatta 19735706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 1964321 - 1964227
Alignment:
Q  29 tattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 123  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||    
T  1964321 tattggttggtcacacttgtaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaaatactttttattggagtc 1964227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 8352633 - 8352738
Alignment:
Q  38 gtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 137  Q
    |||||| || ||||||||||||||| || ||||| | ||||||||||||||||||| ||  |||||||||||||| ||||| ||||||||||||||||||    
T  8352633 gtcccattttcaaaagaagtaataattttttttttt-taatgatgtaaagttagtgagacttatttaagtatttttcattgaagtccttattagtgtatt 8352731  T
Q  138 gtcattg 144  Q
    |||||||    
T  8352732 gtcattg 8352738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 2842562 - 2842651
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||| | |||||||||| || ||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  2842562 taaattatttttgtttaatgatgtacagatagtgggacatatttaaatatttttcattggagtccttattagtgtattgtcattggagtc 2842651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 8515681 - 8515546
Alignment:
Q  15 agtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttc 113  Q
    ||||||||||| ||||||  ||||||||||||| |||| | |||   ||||||||||| | |||||||||||||  |||||||  ||||||||||||||     
T  8515681 agtaataaaatgtgtattacttggtcccacttgtaaaaaggagtggaaaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttt 8515582  T
Q  114 cattggagtccttattagtgtattgtcattggagtc 149  Q
     ||| |||||||||||||||||||| ||||||||||    
T  8515581 tattcgagtccttattagtgtattgccattggagtc 8515546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 8488801 - 8488713
Alignment:
Q  61 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||||| | ||||||||||||| ||||||||  ||||||||||||||  |||| ||||||||||||||||||| ||||||||||    
T  8488801 aaattatttttgtttaatgatgtaaagatagtgggacatatttaagtattttttattgaagtccttattagtgtattgccattggagtc 8488713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 48294132 - 48294026
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 154  Q
    |||||||||||||| | |||||||||||||||||||||| |||||||  || ||| |||||||||||||||||||||| |  ||||||||||   |||||    
T  48294132 aataaattatttttgtttaatgatgtaaagttagtgggacctatttagatactttacattggagtccttattagtgtacttccattggagtcaatgagtc 48294033  T
Q  155 tttaata 161  Q
    |||||||    
T  48294032 tttaata 48294026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 1837760 - 1837867
Alignment:
Q  57 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 153  Q
    |||||||||| |||| | |||||||| ||||||||||||   |||||||||| |||  ||| |||||||||||||||||||||||||||||||   ||||    
T  1837760 taataaattacttttgtttaatgatgcaaagttagtggggcatatttaagtactttttatttgagtccttattagtgtattgtcattggagtcattgagt 1837859  T
Q  154 ctttaata 161  Q
    ||||||||    
T  1837860 ctttaata 1837867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 584070 - 584182
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 156  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| |||||||||| || ||||||||||| ||||||||||   ||||| |    
T  584070 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtctttgttagtgtattgccattggagtcattgagtcct 584169  T
Q  157 taatagctacttt 169  Q
    |||||| ||||||    
T  584170 taatagatacttt 584182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 25173480 - 25173569
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 147  Q
    ||||||||| |||| |||||||||||||| |||||| || ||||||||||| ||| |||| |||||  | ||||||||||||||||||||    
T  25173480 aataaattacttttgtataatgatgtaaaattagtgagacctatttaagtacttttcatttgagtcactgttagtgtattgtcattggag 25173569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 44592100 - 44592189
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||| || | ||||||||||||| || |||||  |||||||||| ||| |||| ||||||||||||||||||||| |||||||||    
T  44592100 taaattattgttgtttaatgatgtaaagataatgggacatatttaagtacttttcattagagtccttattagtgtattgttattggagtc 44592189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 27399762 - 27399853
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||| ||||  |||||||||||||| |||||| | |||||||| || ||| ||||||||||  | ||||||||||||||||||||||    
T  27399762 aataaattacttttgcataatgatgtaaaggtagtggaacctatttaattacttttcattggagtcaatgttagtgtattgtcattggagtc 27399853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 38974900 - 38974813
Alignment:
Q  61 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||||| | ||||||||||| |||||||||  ||||||||||| ||| | || ||||||||||||||||| | |||||||||||    
T  38974900 aaattatttttgtttaatgatgtaa-gttagtggggcctatttaagtacttttctttagagtccttattagtgtactctcattggagtc 38974813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 21294841 - 21294919
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtat 136  Q
    |||||||||||| | | |||||||||||||||||| |||  ||||||| ||||||  ||||||||| ||||||||||||    
T  21294841 aataaattatttgtgtttaatgatgtaaagttagtaggacatatttaaatatttttaattggagtctttattagtgtat 21294919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 48557962 - 48558050
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||| |  |||||||||||| ||||| ||| |||||||||| ||| ||||||| || |||||| |||||| |||||||||||    
T  48557962 taaattatttttgttcaatgatgtaaagatagtgcgat-tatttaagtacttttcattggactcattattaatgtattctcattggagtc 48558050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 48767846 - 48767964
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 154  Q
    |||| |||| |||| ||||||||||||||||||||| ||  |||||||| | ||| ||||||||||| | || |||||||  ||||||||||   |||||    
T  48767846 aatatattacttttgtataatgatgtaaagttagtgagacatatttaagcacttttcattggagtccctgttggtgtattaccattggagtcattgagtc 48767945  T
Q  155 tttaatagctactttcatt 173  Q
     |||||||  |||||||||    
T  48767946 cttaataggaactttcatt 48767964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 8055396 - 8055305
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||| |||||| ||||||||||||||||||| || ||||||||  | |||  ||   | ||||| ||||||||||||||||||||||    
T  8055396 aataaattacttttatgtaatgatgtaaagttagtgagacctatttaatcactttttatcatattccttgttagtgtattgtcattggagtc 8055305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 43786686 - 43786753
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtcctta 127  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| | ||||||||||||    
T  43786686 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttctttggagtcctta 43786753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 3641570 - 3641647
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 135  Q
    |||||||||||||| | ||||| | ||| ||||||||| | |||||||||| |||  |||| |||| |||||||||||    
T  3641570 aataaattatttttgtttaatgctataatgttagtggggtttatttaagtacttttaattgaagtctttattagtgta 3641647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 46688893 - 46688759
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| |||    
T  46688893 gaagtaataaa-tatgtactggttggtcctacttgcaaaagaagtaataaattatttttgtataatgatgtaaagttagtggg-cctatttaagtacttt 46688796  T
Q  113 ccattggagtccttattagtgtattgtcattggagtc 149  Q
     |||||||||| |||||||||||||||||||||||||    
T  46688795 tcattggagtcattattagtgtattgtcattggagtc 46688759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 5939776 - 5939859
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtggga 96  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||    
T  5939776 gaagtaataaaatatgtactggttggtcccacttgcagaagaagtaataaattatttttgtataatgatgtaaagttagaggga 5939859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 28523015 - 28522879
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    |||||||||||||||||| |  ||| |  ||||||||||||||||||||||||||||||  |||||||| |||||||| || |  ||||||||  | |||    
T  28523015 gaagtaataaaatatgtactaattgatatcacttgcaaaagaagtaataaattatttttgcataatgatataaagttaatgtggcctatttaaaaacttt 28522916  T
Q  113 ccattggagtccttattagtgtattgtcattggagtc 149  Q
     |||| |||||||||||||||||||||||||||||||    
T  28522915 gcattagagtccttattagtgtattgtcattggagtc 28522879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 50011816 - 50011719
Alignment:
Q  13 gaagtaataaaatatgta-----ttggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaa 105  Q
    ||||||||||||||||||     ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||    
T  50011816 gaagtaataaaatatgtactggtttggttggtaccacttgcaaaagaagtaataaattatttttgtataatgatgtaaagttagcggggtatatttaa 50011719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 26991914 - 26991775
Alignment:
Q  15 agtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctatttaagtat 109  Q
    ||||||||||| |||| |  |||||||||||||  ||||| |||||    |||||||||||| | ||||||||||||| ||||| ||  ||||||||||     
T  26991914 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttgtttaatgatgtaaagatagtgagacatatttaagtac 26991815  T
Q  110 tttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||| |||||||||||||||||||||||||| |||||||||    
T  26991814 ttttcattggagtccttattagtgtattgttattggagtc 26991775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 30627223 - 30627134
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||||||| |||| ||||| |||||| ||||||||||||||||||    
T  30627223 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcatttgagtctttattaatgtattgtcattggagtc 30627134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 45468072 - 45467983
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||| | ||||||||||||| ||||||||  ||||||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  45468072 taaattatttttgtttaatgatgtaaagatagtgggacatatttaaatatttttcattggagtcattatcagtgtattgtcattggagtc 45467983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 23082429 - 23082506
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 135  Q
    |||||||||||||| | ||||| |||||||||||||   |||||||||||||||| ||||||||||||||||||||||    
T  23082429 aataaattatttttgtttaatgttgtaaagttagtgaagtctatttaagtatttttcattggagtccttattagtgta 23082506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 49650119 - 49650208
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| ||||||||||||||||| |||||||| |||||||||    
T  49650119 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtccttattaatgtattgttattggagtc 49650208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 6597462 - 6597553
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||| | |||| |||||||||||||||||||||  | |||||||| |||| | ||||||||||||| |||||||| |||||||||||||    
T  6597462 aataaatcacttttgtataatgatgtaaagttagtgtaacctatttaaatattattcattggagtccttgttagtgtactgtcattggagtc 6597553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 27163145 - 27163054
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||| |||| |||||| ||||||||||||||  | ||||||||| ||||| ||||||||||  | ||||||||||||||||||||||    
T  27163145 aataaattacttttgtataattatgtaaagttagtgtcacctatttaagcatttttcattggagtctctgttagtgtattgtcattggagtc 27163054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 39092967 - 39093031
Alignment:
Q  85 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||||||  |||||||||| |||  |||||||||||||||| ||||||||||||||||||    
T  39092967 aagttagtgggacatatttaagtacttttaattggagtccttattattgtattgtcattggagtc 39093031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 15456831 - 15456878
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaat 60  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  15456831 gaagtaataaaatatgtattagttggtcccacttgcaaaagaggtaat 15456878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 35718975 - 35718836
Alignment:
Q  15 agtaataaaatatgtattggttggtcccacttgcaaaaga-agtaa----taaattatttttatataatgatgtaaagttagtgggatctatttaagtat 109  Q
    ||||||||||| |||| |  ||||||||||||| |||| | |||||    |||||||||||| | |||| | |||||| ||||| ||  ||||||||||     
T  35718975 agtaataaaatgtgtactacttggtcccacttgtaaaaaagagtaataagtaaattatttttgtttaataaagtaaagatagtgagacatatttaagtac 35718876  T
Q  110 tttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||| |||||| |||||| ||||||||||| ||||||||||    
T  35718875 ttttcattggggtccttgttagtgtattgccattggagtc 35718836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 38790671 - 38790605
Alignment:
Q  57 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 123  Q
    |||||||||| |||| ||||||||||||||||||||| ||  |||||||| ||||| ||||||||||    
T  38790671 taataaattacttttgtataatgatgtaaagttagtgagacttatttaagcatttttcattggagtc 38790605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 2356231 - 2356323
Alignment:
Q  58 aataaattatttt-tatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||||||| |||||||||||||||||| ||||| |||| ||||| || |||  |||||||||   |||| |||||||| |||||||||    
T  2356231 aataaattattttttatataatgatgtaaagtcagtggaatctttttaaatactttttattggagtctcaattaatgtattgttattggagtc 2356323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 22767175 - 22767212
Alignment:
Q  98 ctatttaagtattttccattggagtccttattagtgta 135  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  22767175 ctatttaagtatttttcattggagtccttattagtgta 22767212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 37586547 - 37586495
Alignment:
Q  75 taatgatgtaaagttagtgggatctatttaagtattttccattggagtcctta 127  Q
    |||||||||||||||| || ||  |||||||||||||| ||||||||||||||    
T  37586547 taatgatgtaaagttaatgagaattatttaagtatttttcattggagtcctta 37586495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 31437069 - 31437116
Alignment:
Q  14 aagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 61  Q
    ||||||||||||||||||  |||||||| |||| ||||||||||||||    
T  31437069 aagtaataaaatatgtataagttggtcctactttcaaaagaagtaata 31437116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 47675967 - 47675909
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattg 118  Q
    ||||||| |||| | ||||||||||||| ||||||||  |||||||||||||| |||||    
T  47675967 taaattacttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcattg 47675909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 44343422 - 44343491
Alignment:
Q  68 ttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 137  Q
    |||| ||||||| || ||||||| || ||  |||||||||||||| |||||||||||||| |||| ||||    
T  44343422 ttttgtataatgttgcaaagttaatgagacatatttaagtatttttcattggagtccttactagtatatt 44343491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 50011680 - 50011647
Alignment:
Q  115 attggagtccttattagtgtattgtcattggagt 148  Q
    |||||||||||||||| |||||||||||||||||    
T  50011680 attggagtccttattattgtattgtcattggagt 50011647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 25750014 - 25749880
Alignment:
Q  14 aagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttc 113  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||  ||||||||||||||     
T  25750014 aagtaataaaatatgtactggttggtcccacttgcaaaataagtaataaattatttttgtataataatgtaaagttagtgggacatatttaagtattttt 25749915  T
Q  114 cattggagtccttattagtgtattgtcattggagtc 149  Q
    || |||||| ||||||||||||||| ||||||||||    
T  25749914 ca-tggagttcttattagtgtattgccattggagtc 25749880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 42029719 - 42029584
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    ||||||||||||||||||||  |||||| |||||  ||||||| |||||| |||||||| | |||||||||||||||||| |||| ||||||||||||||    
T  42029719 gaagtaataaaatatgtattatttggtctcacttataaaagaaataataa-ttatttttgtttaatgatgtaaagttagttggatttatttaagtatttt 42029621  T
Q  113 ccattggagtccttattagtgtattgtcattggagtc 149  Q
     ||||| |||| |||||||||||||||||||||||||    
T  42029620 tcattgaagtctttattagtgtattgtcattggagtc 42029584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 21848319 - 21848228
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||  ||||||||| | ||||||||||| |||||||||||    
T  21848319 aataaattatttttgtataatgatataaagttagtgggacctatttaagtactttttattggagtcttgattagtgtattttcattggagtc 21848228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 27957505 - 27957582
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagtta 90  Q
    ||||||||||||||| || ||||| |||||| ||||||||||| ||||||||||||||| || |||||||||||||||    
T  27957505 gaagtaataaaatatatactggttagtcccaattgcaaaagaaataataaattatttttgtaaaatgatgtaaagtta 27957582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 37456044 - 37456136
Alignment:
Q  57 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  37456044 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 37456136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 44059281 - 44059341
Alignment:
Q  75 taatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 135  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  44059281 taatgacgtaaagttagtgggatctatttaagtacttttcattggagtccttattagtgta 44059341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 2968946 - 2968869
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 135  Q
    |||||||||||||| | ||||||||||||||||||||   ||||||||||| ||| | ||||||||||||||||||||    
T  2968946 aataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtacttttcgttggagtccttattagtgta 2968869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 10624826 - 10624914
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 148  Q
    |||||||||||| | |||| |||||||| ||||||||| |||||||||| |||  |||||||| ||||||||| |||| ||||||||||    
T  10624826 taaattatttttgtttaataatgtaaagatagtgggatatatttaagtacttttaattggagttcttattagtatattctcattggagt 10624914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 27559033 - 27559125
Alignment:
Q  57 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||| ||||||| ||||||||||    
T  27559033 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattaatgtattgccattggagtc 27559125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 28967689 - 28967600
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||| | ||||||||||||| || ||| |  |||||||||| ||| |||||||||| |||||| | ||||||||||||||||    
T  28967689 taaattatttttgtttaatgatgtaaagataatggaacatatttaagtacttttcattggagtcattattactttattgtcattggagtc 28967600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 39446255 - 39446308
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaatta 66  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  39446255 gaagtaataaaatatgtattagttgatcccacttgcaaaagaagtaatatatta 39446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 37847690 - 37847766
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgt 134  Q
    |||||||||||||| | ||| |||||||||| |||| |  ||||||||||||||| |||| ||||||||||||||||    
T  37847690 aataaattatttttgtttaaagatgtaaagtaagtgtggcctatttaagtatttttcattagagtccttattagtgt 37847766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 3703580 - 3703501
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 137  Q
    |||||||||||||| | |||||||||||||||||||||| |||| |||||| |||  |||| | ||||||||| ||||||    
T  3703580 aataaattatttttgtttaatgatgtaaagttagtgggacctatataagtactttttattgtaatccttattaatgtatt 3703501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 12671787 - 12671878
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||| | |||| |||||| ||||||||||||| |||   |||||| |||||| ||||||||||  |||||||||||||||||| |||||    
T  12671787 aataaatgacttttgtataataatgtaaagttagtaggactcatttaaatatttttcattggagtctgtattagtgtattgtcatttgagtc 12671878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 12863671 - 12863601
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttatta 130  Q
    |||||||||||| | ||| ||| ||||||||||||| |||||||||||||||| |||||  ||||||||||    
T  12863671 taaattatttttgtttaacgatataaagttagtggggtctatttaagtatttttcattgatgtccttatta 12863601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 21848626 - 21848576
Alignment:
Q  11 atgaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 61  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  21848626 atgaagtaataaaatatgtattagtttgtcccacttgcaaaaaaagtaata 21848576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 11916247 - 11916161
Alignment:
Q  85 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtcgagtctttaatagctactttcatt 173  Q
    ||||||||| || |||||||||||||||  ||| ||||| |||||||||||||| |||| |||||  ||| ||||||| ||||||||||    
T  11916247 aagttagtgtgagctatttaagtatttttaatttgagtctttattagtgtattgacattagagtc--gtccttaataggtactttcatt 11916161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 12184735 - 12184823
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||| ||| | ||||||||||||| ||||||||  |||||||||| ||| ||||| | |  |||||||||||||||||||||||||    
T  12184735 taaattatatttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaaat-tttattagtgtattgtcattggagtc 12184823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 39446348 - 39446410
Alignment:
Q  85 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||| |  |||||||||| |||  |||||||||||||  ||||||||||||||||||||    
T  39446348 aagttagtggaacatatttaagtacttttaattggagtcctta--agtgtattgtcattggagtc 39446410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 37847354 - 37847402
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 61  Q
    |||||||||||||||||| |   ||||||||||| ||||||||||||||    
T  37847354 gaagtaataaaatatgtactatgtggtcccacttacaaaagaagtaata 37847402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 13663 - 13769
Alignment:
Q  49 aaaagaag-taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 147  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  13663 aaaagaagctaatagattatttttatataatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggag 13762  T
Q  148 tcgagtc 154  Q
    |||||||    
T  13763 tcgagtc 13769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 21400 - 21506
Alignment:
Q  49 aaaagaag-taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 147  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  21400 aaaagaagctaatagattatttttatataatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggag 21499  T
Q  148 tcgagtc 154  Q
    |||||||    
T  21500 tcgagtc 21506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 21924 - 21971
Alignment:
Q  183 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctg 230  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||||    
T  21924 ttataaataagtgatgtatatatgtatggtccattgaagaagtctctg 21971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 25701692 - 25701529
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    |||||||||||||||||   |||| |||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||| ||  |||||||||| |||    
T  25701692 gaagtaataaaatatgttccggtttgtcccacttgcaaaagaaataataaattatttttgtataataatgtaaagttggtgagacttatttaagtacttt 25701593  T
Q  113 ccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcatt 173  Q
      |||| ||| ||||||||||||||||||||||||||   || || ||||||| ||||||||||    
T  25701592 taattgaagttcttattagtgtattgtcattggagtctttgaatccttaataggtactttcatt 25701529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 47142712 - 47142848
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    |||||||||||||||||| |  ||||||   ||||||||| |||||||||||||||||| | || |||||||||||||||| || ||||||||||| |||    
T  47142712 gaagtaataaaatatgtactatttggtcttccttgcaaaataagtaataaattatttttgtttagtgatgtaaagttagtgagacctatttaagtagttt 47142811  T
Q  113 ccattggagtccttattagtgtattgtcattggagtc 149  Q
     ||||||||||||||||||| | ||||||||||||||    
T  47142812 tcattggagtccttattagtatcttgtcattggagtc 47142848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 1559680 - 1559590
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 148  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||||| |||| |||| ||||||||||||||| |||||||||    
T  1559680 aataaataatttttgtataatgatgtaaagttagtgagacctatttaagtatttttcattagagttcttattagtgtattgacattggagt 1559590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 31833957 - 31834048
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||||| | | |||||||||    
T  31833957 aataaattatttttgtttaatgatgtaaagttagtgggatctatttaagtattttttattagagttcttattagtgtacttttattggagtc 31834048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 32552306 - 32552397
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||| || ||||| | |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||    
T  32552306 aataatttttttttgtttaatgatgtaaagttaatgggacctatttaagtatttttcattggagtccttattagtgtactctcattggagtc 32552397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 19611149 - 19611261
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 156  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||| ||| ||||| | | ||||||||||||||||||||||||||   ||||| |    
T  19611149 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaatttcttattagtgtattgtcattggagtcattgagtcct 19611248  T
Q  157 taatagctacttt 169  Q
    |||||| ||||||    
T  19611249 taataggtacttt 19611261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 1151687 - 1151610
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 135  Q
    |||||||||||||| | |||||||||||||||||||||  ||||||||||| |||  |||||||||||||||||||||    
T  1151687 aataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgta 1151610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 23059103 - 23059210
Alignment:
Q  57 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 153  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| ||||||||||||||| |||| ||||||||||   ||||    
T  23059103 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtggattgccattggagtcattgagt 23059202  T
Q  154 ctttaata 161  Q
    ||||||||    
T  23059203 ctttaata 23059210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 55222401 - 55222490
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| |||||||||  |||||||||||||||||||||||||    
T  55222401 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtaattttcattggagtatttattagtgtattgtcattggagtc 55222490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 46981819 - 46981920
Alignment:
Q  48 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 147  Q
    ||||||||||||| ||||| |||| ||||||||||||||||||||| ||  ||||||  || ||| || || ||  ||||||||||||||||||||||||    
T  46981819 caaaagaagtaatgaattacttttgtataatgatgtaaagttagtgagacttatttagatacttttcaatgaagctcttattagtgtattgtcattggag 46981918  T
Q  148 tc 149  Q
    ||    
T  46981919 tc 46981920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 32721994 - 32721914
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtg 93  Q
    |||||||||||||||||||  |||||||  |||| ||||||| ||||||||||| ||||  ||||||||||||||||||||    
T  32721994 gaagtaataaaatatgtataagttggtcttactttcaaaagatgtaataaattacttttgaataatgatgtaaagttagtg 32721914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 38585977 - 38586055
Alignment:
Q  98 ctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcatt 173  Q
    |||||||||||| ||  ||||||||| |||||||||||||||||||||||||   ||||| ||||||||||||||||||    
T  38585977 ctatttaagtatatttgattggagtctttattagtgtattgtcattggagtcattgagtccttaatagctactttcatt 38586055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 37526851 - 37526766
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 144  Q
    ||||||||||||| |||||||||||||||||||||   || |||||||||||||| ||||| ||||  ||||||| |||||||||||    
T  37526851 aataaattatttt-atataatgatgtaaagttagtaaaatatatttaagtatttttcattgaagtctctattagtttattgtcattg 37526766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 7325633 - 7325564
Alignment:
Q  43 acttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||||||| ||  ||||||| ||||||    
T  7325633 acttgtaaaagaagtaataaattatttttgtttaatgatgtaaagttagtgagaaatatttaaatatttt 7325564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 40242603 - 40242684
Alignment:
Q  10 gatgaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaatta-tttttatataatgatgtaaagtta 90  Q
    |||||||||||||||||||||||  ||  |||||||| ||||||||||||| ||||| ||||| |||||| |||||||||||    
T  40242603 gatgaagtaataaaatatgtattaattaatcccacttacaaaagaagtaattaattattttttgtataataatgtaaagtta 40242684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 14903368 - 14903453
Alignment:
Q  59 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 144  Q
    ||||||||||||| | |||||||| ||||||||||||   ||||||  || ||| |||| ||||| ||||||||||||||||||||    
T  14903368 ataaattatttttgtttaatgatgcaaagttagtggggcatatttatatacttttcatttgagtcattattagtgtattgtcattg 14903453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 1294572 - 1294616
Alignment:
Q  103 taagtattttccattggagtccttattagtgtattgtcattggag 147  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  1294572 taagtacttttcattggagtccttattagtgtattgtcattggag 1294616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 5992285 - 5992202
Alignment:
Q  59 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||||||||| ||||||||||||| ||||||||  ||| |       || ||||||||||||||||||||||||||||||| ||||    
T  5992285 ataaattatttttatttaatgatgtaaagatagtgggacatatct-------tttcattggagtccttattagtgtattgtcattgaagtc 5992202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 3935834 - 3935755
Alignment:
Q  59 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattg 138  Q
    ||||||||||||| | ||||||||||||| || || ||  |||||||||| ||| ||||||||||||| |||| ||||||    
T  3935834 ataaattatttttgtttaatgatgtaaagataatgagacatatttaagtacttttcattggagtccttgttagagtattg 3935755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 13778185 - 13778271
Alignment:
Q  62 aattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||| |||||||||||||||||| ||||||| ||  |||||||| | ||| |||||||||| || ||| |||||||||||| |||||    
T  13778185 aattacttttatataatgatgtaa-gttagtgagacatatttaagcacttttcattggagtctttgttaatgtattgtcattagagtc 13778271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 28131342 - 28131439
Alignment:
Q  75 taatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag---tcgagtctttaatagctacttt 169  Q
    ||||||||||||||||||| ||  |||||||||| |||  || ||||||||| ||||||||||  ||||||||   ||| ||||||||||| ||||||    
T  28131342 taatgatgtaaagttagtgagacttatttaagtaatttttatgggagtccttgttagtgtattaccattggagtcatcgggtctttaatagatacttt 28131439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 48098387 - 48098434
Alignment:
Q  102 ttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||||    
T  48098387 ttaagtattttttattggagtccttattaatgtattgtcattggagtc 48098434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 1559952 - 1559900
Alignment:
Q  14 aagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaatta 66  Q
    ||||||||||||||||| | ||||||| ||||||||| |||||||||| ||||    
T  1559952 aagtaataaaatatgtactagttggtcacacttgcaacagaagtaatatatta 1559900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 28131252 - 28131296
Alignment:
Q  17 taataaaatatgtattggttggtcccacttgcaaaagaagtaata 61  Q
    |||||| |||||||||  ||||||||||||||||||||| |||||    
T  28131252 taataatatatgtattacttggtcccacttgcaaaagaaataata 28131296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 27753246 - 27753110
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    |||||||||||||||||| |  ||| || ||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||  |||||||||| |||    
T  27753246 gaagtaataaaatatgtactatttgatctcacttgcaaaagaagtaataaattagttttgtttaatgttgtaaagttagtgggacttatttaagtacttt 27753147  T
Q  113 ccattggagtccttattagtgtattgtcattggagtc 149  Q
     |||| |||||||||||||||||||| |||| |||||    
T  27753146 tcatttgagtccttattagtgtattgacatttgagtc 27753110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 29465434 - 29465298
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    ||||| |||||||||||| |||||||||  |||| |||||||| ||||||| || |||| |||||||||||||| |||||| |||||||||||| |||||    
T  29465434 gaagtgataaaatatgtactggttggtctaacttacaaaagaaataataaactaattttgtataatgatgtaaacttagtgagatctatttaagaatttt 29465335  T
Q  113 ccattggagtccttattagtgtattgtcattggagtc 149  Q
     |||||||||| ||||||||| ||||||||| |||||    
T  29465334 tcattggagtcattattagtgaattgtcatttgagtc 29465298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 31766560 - 31766425
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    ||||||||||||||||||  |||| ||| ||||| ||||| |||| |||||| |||||| |||||| ||||||||||||||||||||||||||||| | |    
T  31766560 gaagtaataaaatatgtacgggttagtctcacttacaaaataagttataaataatttttgtataataatgtaaagttagtgggatctatttaagtactct 31766461  T
Q  113 ccattggagtccttattagtgtattgtcattggagtc 149  Q
      |||||||| |||||||||||||||||||| |||||    
T  31766460 ttattggagt-cttattagtgtattgtcatttgagtc 31766425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 6812053 - 6812144
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||||| ||| |||||||||| |||||||||||||| ||||||||||    
T  6812053 aataaattatttttgtataatgatgtaaagttagtggaacctatttaagtacttttcattggagtctttattagtgtattgccattggagtc 6812144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 12919069 - 12919161
Alignment:
Q  57 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||||||||| | |||| | | ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  12919069 taataaattatttttgtttaataaggcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 12919161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 17096074 - 17096023
Alignment:
Q  98 ctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  17096074 ctatttaagtacttttcattgaagtccttattagtgtattgtcattggagtc 17096023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 19687610 - 19687673
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 123  Q
    |||||||||||| | ||||||||||||| || |||||  |||||||||| ||| ||||||||||    
T  19687610 taaattatttttgtttaatgatgtaaagatactgggacatatttaagtacttttcattggagtc 19687673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 4898156 - 4898278
Alignment:
Q  23 aatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagt 122  Q
    |||||| | |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||| ||  |||||||||| ||| |||||||||    
T  4898156 aatatgcactggttggtcccacttgtaaaagaagtaataaattatttttgtataataatgtaaagctagtgagacttatttaagtacttttcattggagt 4898255  T
Q  123 -ccttattagtgtattgtcattg 144  Q
     ||||||||||||||||||||||    
T  4898256 cccttattagtgtattgtcattg 4898278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 31066423 - 31066332
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||| |||| ||||||||||||||||||||||||  |||||||||||||| ||||||| ||| |||||||||||||||||| |||||    
T  31066423 aataaattacttttgtataatgatgtaaagttagtgggacatatttaagtatttttcattggaatccatattagtgtattgtcattagagtc 31066332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 565353 - 565443
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 148  Q
    |||||||||||||| ||||||||| |||| ||||||| |  |||||||||| ||| || ||||||||||||||||||||||||||||||||    
T  565353 aataaattatttttttataatgatctaaatttagtggaacatatttaagtacttttcaatggagtccttattagtgtattgtcattggagt 565443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 31046481 - 31046367
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 154  Q
    ||||||||| |||| |||||||||||||||||||| |||  ||||||||||||||  |||| | ||| ||||||||||||||| || |||||   |||||    
T  31046481 aataaattacttttgtataatgatgtaaagttagtcggacatatttaagtattttttattgaaatccatattagtgtattgtctttagagtcattgagtc 31046382  T
Q  155 tttaatagctacttt 169  Q
     ||||||| ||||||    
T  31046381 cttaatagatacttt 31046367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 4396221 - 4396312
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||| |||| ||||||||||||||||||||| |  ||||||||||||||| ||||  ||||||| ||||| || || ||||||||||    
T  4396221 aataaattacttttttataatgatgtaaagttagtgtggcctatttaagtatttttcattaaagtccttgttagtatactgccattggagtc 4396312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 8517016 - 8516926
Alignment:
Q  59 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||||||| | ||||||||||||| |||||| |  ||||||||||||||  |||||||| | | |||||||||||||||| |||||    
T  8517016 ataaattatttttgtttaatgatgtaaagatagtggaacatatttaagtattttttattggagttcatgttagtgtattgtcattagagtc 8516926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 15958789 - 15958740
Alignment:
Q  99 tatttaagtattttccattggagtccttattagtgtattgtcattggagt 148  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  15958789 tatttaagtacttttcattggagtccttattagtgtattgtcattggagt 15958740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 12883274 - 12883183
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta-ttgtcattggagtc 149  Q
    ||||||||||||||   ||||||| |||||| |||||| | |||||||||| ||| ||||||||| |||||||||||| || |||||||||||    
T  12883274 aataaattatttttgcttaatgatataaagtaagtggggtatatttaagtacttttcattggagt-cttattagtgtacttctcattggagtc 12883183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 30313056 - 30312968
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattgga 146  Q
    |||||||||||||| | ||||||||||||||||||| || ||  |||| |||||| ||||||||||  ||||||| ||||  |||||||    
T  30313056 aataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtctatattagtatatttccattgga 30312968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 30350476 - 30350411
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 123  Q
    |||||||||||||| | ||||||||||||||||||| || ||  |||| |||||| ||||||||||    
T  30350476 aataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 30350411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 2553196 - 2553270
Alignment:
Q  61 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 135  Q
    |||||||||||   |||||||||||||||||||  || |||||||||| ||| || || | ||||||||||||||    
T  2553196 aaattatttttggttaatgatgtaaagttagtgaaatatatttaagtacttttcactgaaatccttattagtgta 2553270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 58 - 173
Target Start/End: Complemental strand, 7177152 - 7177034
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 154  Q
    |||||||||||||| ||||||| ||||||||||||||||  |||||||||| ||| |||||||| |||||||||||||||||||||||||||   |||||    
T  7177152 aataaattatttttgtataatggtgtaaagttagtgggacttatttaagtacttttcattggagcccttattagtgtattgtcattggagtcattgagtc 7177053  T
Q  155 tttaatagctactttcatt 173  Q
     ||||||| ||||||||||    
T  7177052 cttaatagatactttcatt 7177034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 22800667 - 22800576
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||||  || ||||||||||| ||||||||||||||||||||||||    
T  22800667 aataaattacttttgtataatgatgtaaagttagtgggacctatttaagtacatttcattggagtccctattagtgtattgtcattggagtc 22800576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 1581489 - 1581578
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||| ||| ||||||||||||||||| |||||||||||| |||||    
T  1581489 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattggagtccttattaatgtattgtcattcgagtc 1581578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 14523260 - 14523171
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||| | ||||||||||||| |||||| |  |||||||||| ||| || |||||||||||||||||||||||||||| ||||    
T  14523260 taaattatttttgtttaatgatgtaaagatagtggaacatatttaagtacttttcagtggagtccttattagtgtattgtcattgaagtc 14523171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 11989808 - 11989717
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||| ||||| ||||||||||||| |||||| ||  |||||||| | ||| ||||||||||| | ||||||||||||||||||||||    
T  11989808 aataaattacttttacataatgatgtaaaattagtgagacatatttaagcacttttcattggagtccatgttagtgtattgtcattggagtc 11989717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 12796029 - 12795955
Alignment:
Q  61 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 135  Q
    ||||||||||| | |||||||||||||||||||||  ||||||||||| ||| |||||||||||||| |||||||    
T  12796029 aaattatttttgtttaatgatgtaaagttagtggggcctatttaagtacttttcattggagtccttactagtgta 12795955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 8693123 - 8693032
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||| |||| |||||| ||||||||||||| ||| ||||||||  | ||| ||||||| |||||||| || ||||||||||| ||||    
T  8693123 aataaattacttttgtataataatgtaaagttagtaggacctatttaacaacttttcattggaatccttattggtttattgtcattgaagtc 8693032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 5423517 - 5423567
Alignment:
Q  99 tatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  5423517 tatttaagtacttttcattgaagtccttattagtgtattgtcattggagtc 5423567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 12532417 - 12532328
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||| | ||||||||||||| ||||||||  | |||||||| ||| |||| || || |||||||||||||  ||||||||||    
T  12532417 taaattatttttgtttaatgatgtaaagatagtgggacatgtttaagtacttttcattagaatctttattagtgtattaccattggagtc 12532328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 43976594 - 43976707
Alignment:
Q  15 agtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaata----aattatttttatataatgatgtaaagttagtgggatctatttaagtat 109  Q
    ||||||||||| |||| |  ||||||||||||| |||| | |||||||    |||| ||||| | ||||||||||||| ||||||||| ||||||||||     
T  43976594 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtcaattgtttttgtttaatgatgtaaagatagtgggatatatttaagtac 43976693  T
Q  110 tttccattggagtc 123  Q
    ||| ||||||||||    
T  43976694 ttttcattggagtc 43976707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 13282128 - 13282221
Alignment:
Q  59 ataaattatttttatataatgatgtaaagttagtgggatctatttaagta---ttttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||| ||   |||  ||| ||||| ||  |||||||||||||||| |||||    
T  13282128 ataaattagttttgtttaatgatgtaaagttagtgggatctatttaattactttttgtcatgggagttctggttagtgtattgtcattagagtc 13282221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 12796338 - 12796294
Alignment:
Q  17 taataaaatatgtattggttggtcccacttgcaaaagaagtaata 61  Q
    |||||||||||||| | |||| |||||||||||||||||||||||    
T  12796338 taataaaatatgtactagttgatcccacttgcaaaagaagtaata 12796294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 22800743 - 22800695
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 61  Q
    |||||||||||||||||||  ||||| ||||||| ||||||||||||||    
T  22800743 gaagtaataaaatatgtataagttgggcccactttcaaaagaagtaata 22800695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 45251277 - 45251232
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 58  Q
    |||||||||||| ||||| | ||||||| |||||||||||||||||    
T  45251277 gaagtaataaaacatgtactagttggtctcacttgcaaaagaagta 45251232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 7177419 - 7177375
Alignment:
Q  17 taataaaatatgtattggttggtcccacttgcaaaagaagtaata 61  Q
    |||||||||||||| | |||| ||||||||| |||||||||||||    
T  7177419 taataaaatatgtactagttgatcccacttgtaaaagaagtaata 7177375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 13282049 - 13282097
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 61  Q
    |||||||||| ||||||| |  |||||| ||||||||||||||||||||    
T  13282049 gaagtaataatatatgtactacttggtctcacttgcaaaagaagtaata 13282097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 41438123 - 41438171
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 61  Q
    ||||||||||||||||||||   ||||||||||| ||||| ||||||||    
T  41438123 gaagtaataaaatatgtattatgtggtcccacttacaaaataagtaata 41438171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 37450776 - 37450915
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtat--- 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||| ||||||| | ||||||||||||       
T  37450776 gaagtaataaaatatgtattggttgatcccacttgcaaaagaagtaataaattatttttgggtaatgatgtaaaattagtgg-acctatttaagtatatt 37450874  T
Q  110 -tttccattggagtccttattagtgtattgtcattggagtc 149  Q
     |||  |||| |||| | |||||| ||||||||||||||||    
T  37450875 ttttttattgaagtcatcattagtatattgtcattggagtc 37450915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 56397223 - 56397091
Alignment:
Q  17 taataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccat 116  Q
    |||||||||||| | | |||| ||| ||||| ||||||||| ||||||||||||| |||||||||||||||||| ||  |  |||||||||||||| |||    
T  56397223 taataaaatatgcagtagttgatccgacttgtaaaagaagttataaattatttttgtataatgatgtaaagttaatgacacatatttaagtatttttcat 56397124  T
Q  117 tggagtccttattagtgtattgtcattggagtc 149  Q
    || |||||||||| | |||||||||||||||||    
T  56397123 tgaagtccttattcgcgtattgtcattggagtc 56397091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 44991906 - 44991744
Alignment:
Q  15 agtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctatttaagtat 109  Q
    ||||||||||| |||| |  |||||||||||||  ||||| |||||    |||||||||||| | ||||||||||||| ||||||||  |||||||||||    
T  44991906 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtaaattatttttgtttaatgatgtaaagatagtgggacatatttaagtat 44991807  T
Q  110 tttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctacttt 169  Q
    ||| ||||||||||||||||||||||||| ||||||||||   ||||| ||||||| ||||||    
T  44991806 ttttcattggagtccttattagtgtattgccattggagtcattgagtccttaataggtacttt 44991744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 12191524 - 12191613
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12191524 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtatttttcattggagtccttattagtgtattgtcattggagtc 12191613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 13678715 - 13678608
Alignment:
Q  57 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 153  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| |||||||||||||||||||||||||||||||   ||||    
T  13678715 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtgtattgtcattggagtcattgagt 13678616  T
Q  154 ctttaata 161  Q
    ||||||||    
T  13678615 ctttaata 13678608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 38068088 - 38068177
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 147  Q
    |||||||||||||| | |||||||||||||||||||||  ||||||||||| |||  ||||||||||||||||||||| | |||||||||    
T  38068088 aataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgtactctcattggag 38068177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 51175526 - 51175638
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 156  Q
    |||||||||||  | ||||||||||||| ||||||||  ||||||||||||||  |||||||||||||||| ||||||| ||||||||||   ||||| |    
T  51175526 taaattattttcgtttaatgatgtaaagatagtgggacatatttaagtattttgaattggagtccttattaatgtattgccattggagtcattgagtcct 51175625  T
Q  157 taatagctacttt 169  Q
    |||||| ||||||    
T  51175626 taataggtacttt 51175638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 36904174 - 36904251
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 135  Q
    |||||||||||||| | ||||||||||||||||||||   ||||||||||||||| || |||||||||||||||||||    
T  36904174 aataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtatttttcactggagtccttattagtgta 36904251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 5744896 - 5744804
Alignment:
Q  57 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  5744896 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 5744804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 27064545 - 27064454
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||  | |||  |||||||||| |||||||||||||||||| |||||    
T  27064545 aataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtc 27064454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 27085649 - 27085558
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 149  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||  | |||  |||||||||| |||||||||||||||||| |||||    
T  27085649 aataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtc 27085558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 4711545 - 4711665
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 112  Q
    |||||||||||||||||| |  ||  ||| ||||| ||||||| ||||||||||||||| | |||||||||||||||||||  |  ||||||||    ||    
T  4711545 gaagtaataaaatatgtactacttaatccaacttgtaaaagaaataataaattatttttgtttaatgatgtaaagttagtgcaacatatttaag----tt 4711640  T
Q  113 ccattggagtccttattagtgtatt 137  Q
     ||||||||||||||||| ||||||    
T  4711641 tcattggagtccttattaatgtatt 4711665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 38168227 - 38168122
Alignment:
Q  59 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtct 155  Q
    ||||||||||||| | |||||||||||| ||||||||   |||||||||| ||| ||||||||||||||||| ||||||   |||||||||   ||||||    
T  38168227 ataaattatttttgtttaatgatgtaaaattagtggggcttatttaagtacttttcattggagtccttattaatgtatttctattggagtcattgagtct 38168128  T
Q  156 ttaata 161  Q
    ||||||    
T  38168127 ttaata 38168122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 38068459 - 38068627
Alignment:
Q  15 agtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaata----aattatttttatataatgatgtaaagttagtggga------tctattt 103  Q
    ||||||||||| |||| |  ||||||||||||| |||| | |||||||    |||||||||| | ||||||||||||| ||||||||      | |||||    
T  38068459 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttctttaatgatgtaaagatagtgggacatatttatattt 38068558  T
Q  104 aagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctacttt 169  Q
    ||||| ||| | |||||||||||||||||||||||||||| |||||   ||||| ||||||| ||||||    
T  38068559 aagtacttttctttggagtccttattagtgtattgtcattagagtcattgagtccttaataggtacttt 38068627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 17058900 - 17058793
Alignment:
Q  65 tatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaata 161  Q
    ||||||| | ||||||||||||| |||||||  ||||||||||| ||| |||| ||||||||||||||||| |   |||||||||   ||||| ||||||    
T  17058900 tatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaata 17058801  T
Q  162 gctacttt 169  Q
    ||||||||    
T  17058800 gctacttt 17058793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 40445717 - 40445843
Alignment:
Q  15 agtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctatttaagtat 109  Q
    ||||||||||| |||| |  |||||||||||||  ||||| |||||    ||||| |||||| | ||||||||||||| |||||||   |||||||||||    
T  40445717 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtaaatcatttttgtttaatgatgtaaagatagtgggccatatttaagtat 40445816  T
Q  110 tttccattggagtccttattagtgtat 136  Q
    ||| | |||||||||||||||||||||    
T  40445817 ttttcgttggagtccttattagtgtat 40445843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 13665858 - 13665782
Alignment:
Q  57 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtg 133  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| |||||||||||||||    
T  13665858 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtg 13665782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 30483010 - 30482923
Alignment:
Q  57 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 144  Q
    |||||||||| |||| |||||||||||||||||| || || |||||||| ||||||  |||||||||  ||||| |||||| ||||||    
T  30483010 taataaattacttttgtataatgatgtaaagttaatgcgacctatttaaatattttttattggagtctctattaatgtattatcattg 30482923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 19853994 - 19854071
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 135  Q
    |||||||||||||| | | |||||||||||||||||||  ||||||||||| |||  |||  ||||||||||||||||    
T  19853994 aataaattatttttgtttgatgatgtaaagttagtggggcctatttaagtactttttattaaagtccttattagtgta 19854071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 49551867 - 49551789
Alignment:
Q  13 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttag 91  Q
    |||||||||||||||||||  |||| ||| |||| | ||| || ||||||||||||||| | |||| ||||||||||||    
T  49551867 gaagtaataaaatatgtatgagttgatcctactttctaaataactaataaattatttttgtgtaataatgtaaagttag 49551789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 56228294 - 56228205
Alignment:
Q  58 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 148  Q
    ||||||||| |||| | ||||||||||| ||||||||  ||||||||| || ||| ||||||||||||||||| |||| |  |||||||||    
T  56228294 aataaattagttttgtttaatgatgtaa-gttagtggtgtctatttaaatacttttcattggagtccttattaatgtacttccattggagt 56228205  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 31767883 - 31767838
Alignment:
Q  99 tatttaagtattttccattggagtccttattagtgtattgtcattg 144  Q
    |||||||||| ||| ||||||||||| |||||||||||||||||||    
T  31767883 tatttaagtacttttcattggagtccatattagtgtattgtcattg 31767838  T

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Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 45832181 - 45832132
Alignment:
Q  99 tatttaagtattttccattggagtccttattagtgtattgtcattggagt 148  Q
    ||||||||||  || ||||||||||||||||||||||||| |||||||||    
T  45832181 tatttaagtacctttcattggagtccttattagtgtattgccattggagt 45832132  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 34929264 - 34929320
Alignment:
Q  68 ttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtcc 124  Q
    ||||||||||| ||||||||||||||| |  |||||| ||||||| |||||||||||    
T  34929264 ttttatataataatgtaaagttagtggaacatatttaggtatttttcattggagtcc 34929320  T

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Target: scaffold0568 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 833 - 726
Alignment:
Q  65 tatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaata 161  Q
    ||||||| | ||||||||||||| |||||||  ||||||||||| ||| |||| ||||||||||||||||| |   |||||||||   ||||| ||||||    
T  833 tatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaata 734  T
Q  162 gctacttt 169  Q
    ||||||||    
T  733 gctacttt 726  T

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Target: scaffold0086 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 33317 - 33242
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 135  Q
    |||||||||||||| ||||||||||||| ||||| || ||||||||||| ||| ||||| ||||||| | ||||||    
T  33317 taaattatttttatttaatgatgtaaagatagtgagacctatttaagtacttttcattgaagtccttgtaagtgta 33242  T

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Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 11567 - 11490
Alignment:
Q  60 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 137  Q
    |||||||||||| | ||||||||||||| |  |||||  |||||||||| ||| |||| |||||||||||||| ||||    
T  11567 taaattatttttgtttaatgatgtaaagattatgggacatatttaagtacttttcatttgagtccttattagtatatt 11490  T

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