View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_low_36 (Length: 242)
Name: NF16435_low_36
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_36 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 37826511 - 37826735
Alignment:
| Q |
18 |
tgaacaagattttcaattaaaacataaacattgtaaataaaatgtaatataaacagttccacaatcctcgattaattattctcagccaatatgttcttgt |
117 |
Q |
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| T |
37826511 |
tgaacaagattttcaattaaaacataaacattgtaaataaaatgtaatataaacagttccacaatcctcgattaattattctcagccaatatgttcttgt |
37826610 |
T |
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| Q |
118 |
atattctctttatgttcttcattaaggtaagactcagaccnnnnnnnnnnnnnnncctgacacttattattgcaaaccccacctcatatacacaaatata |
217 |
Q |
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| T |
37826611 |
atattctctttatgttcttcattaaggtaagactcagaccatatatataatatatcctgacacttattattgcaaaccccacctcatatacacaaatata |
37826710 |
T |
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| Q |
218 |
tgtctcaattagcaaactcattttc |
242 |
Q |
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| T |
37826711 |
tgtctcaattagcaaactcattttc |
37826735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 22362753 - 22362634
Alignment:
| Q |
20 |
aacaagattttcaattaaaacataaacattgtaaataaaatgtaatataaacagttccacaatcctcgattaattattctcagccaatatgttcttgtat |
119 |
Q |
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|||| ||||||||| ||||||||| |||||||||| ||| ||||| | |||| |||||||||||| ||||||||||| | |||| ||||||| || |
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| T |
22362753 |
aacacgattttcaaataaaacatacacattgtaaagaaattgtaaga--aacaattccacaatcctaagttaattattcttaatcaatgtgttcttaaat |
22362656 |
T |
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| Q |
120 |
attctctttatgttcttcatta |
141 |
Q |
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| T |
22362655 |
attctttttatattcttcatta |
22362634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 24198691 - 24198766
Alignment:
| Q |
18 |
tgaacaagattttcaattaaaacataaacattgtaaataaa--atgtaatataaacagttccacaatcctcgatta |
91 |
Q |
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||||| |||||||||||||||||||||||||| |||| ||| |||||| ||| ||||||| |||||||| |||| |
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| T |
24198691 |
tgaactagattttcaattaaaacataaacattataaaaaaaacatgtaaaatatgcagttccgcaatcctcaatta |
24198766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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