View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_low_38 (Length: 240)
Name: NF16435_low_38
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 45 - 219
Target Start/End: Complemental strand, 47089072 - 47088888
Alignment:
| Q |
45 |
gacaataatagaaaacatgctaagctgtgctcagaaggtgagta----------taaaaaagttcaatggtagtaatggtaggtttggtggtgaattctc |
134 |
Q |
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| T |
47089072 |
gacaataatagaaaacatgctaagctgtgctcagaaggtgagtagtgtgtactataaaaaagttcaatggtagtaatggtaggtttggtggtgaattctc |
47088973 |
T |
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| Q |
135 |
acgtggtagtgtatgcttaacaacaaattatacctggtagtgtatggtttaataacaaattagaccgtgtgagccttgatctgcg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47088972 |
acgtggtagtgtatgcttaacaacaaattatacctggtagtgtatggtttaataacaaattagaccgtgtgagccttgatctgcg |
47088888 |
T |
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