View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16435_low_5 (Length: 569)
Name: NF16435_low_5
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16435_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Original strand, 42520161 - 42520701
Alignment:
| Q |
19 |
aggcccctctttgttacagattttgttcaatttttaccaagttattgaatatttttcctgattaactttatcatatttaaaaaacacctgtatgttaaaa |
118 |
Q |
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| T |
42520161 |
aggcccctctttgttacagattttgttcaatttttaccaagttattgaatatttttcctgattaactttatcatatttaaaaaacacctgtatgttaaaa |
42520260 |
T |
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| Q |
119 |
cttgagatatgctgatttgagaatatgtgcatttatgtattgacattacatacttgacaactaagcaatgcactgaaaaccacaaatttgtgtatgcctt |
218 |
Q |
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| T |
42520261 |
cttgagatatgctgatttgagaatatgtgcatttatgtattgacattacatacttgacaactaagcaatgcactgaaaaccacaaatttgtgtatgcctt |
42520360 |
T |
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| Q |
219 |
gttgttttggattttgcaggcataaatgtcctttgtggagtaggaatcctttcaaccccttatgctgctaaagaaggtggatgggtaggactttccatct |
318 |
Q |
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| T |
42520361 |
gttgttttggattttgcaggcataaatgtcctttgtggagtaggaatcctttcaaccccttatgctgctaaagaaggtggatggctaggactttccatct |
42520460 |
T |
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| Q |
319 |
tgttcatttttggaattctttctttttatactggattgctcttgcgttcctgcttggacagtgaacctggtcttgaaacataccctgatattggccaagc |
418 |
Q |
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| T |
42520461 |
tgttcatttttggaattctttctttttatactggattgctcttgcgttcctgcttggacagtgaacctggtcttgaaacataccctgatattggccaagc |
42520560 |
T |
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| Q |
419 |
tgcttttggtactgccggacgaattgctatttcagtaagtcgatcttcatgctcatctaaatactcttacttgcgatcttttccnnnnnnnattgcttgt |
518 |
Q |
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| T |
42520561 |
tgcttttggtactgccggacgaattgctatttcagtaagtcgatcttcatgctcatctaaatactcttacttgtgatcttttcctttttttattgcttgt |
42520660 |
T |
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| Q |
519 |
gtttggtggtttgtgttggtatctaatctcaatttcctatg |
559 |
Q |
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| T |
42520661 |
gtttggtggtttgtgttggtatctaatctcaatttcctatg |
42520701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 221 - 431
Target Start/End: Complemental strand, 19242327 - 19242117
Alignment:
| Q |
221 |
tgttttggattttgcaggcataaatgtcctttgtggagtaggaatcctttcaaccccttatgctgctaaagaaggtggatgggtaggactttccatcttg |
320 |
Q |
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|||||||| ||||||||||||||||| |||||||| || |||||||||||| |||||||||| ||||||||||| |||| | |||||| ||||| |
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| T |
19242327 |
tgttttggtttttgcaggcataaatgctctttgtggggttggaatcctttcagtcccttatgctctcaaagaaggtggttgggctgcactttcaatctta |
19242228 |
T |
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| Q |
321 |
ttcatttttggaattctttctttttatactggattgctcttgcgttcctgcttggacagtgaacctggtcttgaaacataccctgatattggccaagctg |
420 |
Q |
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| T |
19242227 |
ctgatattttcagtattttccttttacactggcttgctgttgcgttattgcttggacagtcaacctggacttgaaacttatcccgacattggccaagctg |
19242128 |
T |
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| Q |
421 |
cttttggtact |
431 |
Q |
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||||||||||| |
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| T |
19242127 |
cttttggtact |
19242117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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