View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16435_low_8 (Length: 499)

Name: NF16435_low_8
Description: NF16435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16435_low_8
NF16435_low_8
[»] chr4 (13 HSPs)
chr4 (12-484)||(8447799-8448273)
chr4 (14-484)||(8443601-8444065)
chr4 (127-484)||(8437400-8437757)
chr4 (49-99)||(8437307-8437357)
chr4 (449-484)||(10460063-10460098)
chr4 (118-165)||(10460379-10460426)
chr4 (374-421)||(10493181-10493228)
chr4 (118-165)||(10553812-10553859)
chr4 (210-260)||(6387911-6387961)
chr4 (12-94)||(10460468-10460550)
chr4 (374-416)||(10463787-10463829)
chr4 (374-416)||(10474734-10474776)
chr4 (435-484)||(6392264-6392313)
[»] chr3 (4 HSPs)
chr3 (15-94)||(25915445-25915524)
chr3 (15-94)||(25901427-25901506)
chr3 (118-157)||(25915563-25915602)
chr3 (449-483)||(25915891-25915925)
[»] chr2 (1 HSPs)
chr2 (116-165)||(25376861-25376910)
[»] chr1 (1 HSPs)
chr1 (380-412)||(50645985-50646017)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 484
Target Start/End: Original strand, 8447799 - 8448273
Alignment:
Q  12 tcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagagatcaagcgaaacaatcacatattcatcaacagttataccattcaaatata 111  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |    
T  8447799 tcatcaaaaccctgaggcaacaacagctgagtgtgtgactcggtggagatagcaagcgaaacaatcatatattcatcaacagttataccattcaaataaa 8447898  T
Q  112 tgtcatagtaattgcgaagggccaaccagttaatagtaccattcaaattcacacaggca--ctattgttataagattgaaaccaataaagtggaagcagt 209  Q
    || || |||||||||||| |||||||||||||||||||||||||||||||||||| | |  ||||| ||| ||| |||||||||||| ||||||||||||    
T  8447899 tgacaaagtaattgcgaaaggccaaccagttaatagtaccattcaaattcacacatgtatactattattacaaggttgaaaccaatatagtggaagcagt 8447998  T
Q  210 aagcattgaatatttctccaagaactattcccaatgcttacaactttcaccatacctgttgcatcacccatgttcttatacaacttcacacgaaacgcta 309  Q
    || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||  ||| |||| ||||| ||| | || |||||||||||    
T  8447999 aaacattgaatatctctccaagaactattcccaatgcttaaaactttcaccatacctgttgcagtaccgatgtccttatccaattccatacgaaacgcta 8448098  T
Q  310 tcaccttataagtttcagttaaataatcgtatccaaaaaagaacttacgataattacgcggggttaaaacaaattcagattttgtcctagtggctggatt 409  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| ||    
T  8448099 tcaccttataagtttcagttaaataatcgtaaccaaaaaagaacttactataattacgtggggctaaaacaaattcagattttgtcctagtggctgggtt 8448198  T
Q  410 ccataaatagatacatccacgaagaggtgaagtattccgatcaagcaagcatagcaatccattgcatgaaccaac 484  Q
    ||||||| |||  |||  ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8448199 ccataaacagagccattgacgagcaggtgaagtattccgatcaagcaagcatagcaatccattgcatgaaccaac 8448273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 484
Target Start/End: Original strand, 8443601 - 8444065
Alignment:
Q  14 atcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagagatcaagcgaaacaatcacatattcatcaacagttataccattcaaatatatg 113  Q
    ||||| ||| |||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| ||    
T  8443601 atcaacaccctgaggcaacagcagctgagtgtgtgactcggtggagagatcaagcgaaactatcacatattcgacaacagttataccattcaaatatttg 8443700  T
Q  114 tcatagtaattgcgaagggccaaccagttaatagtaccattcaaattcacacaggcactattgttataagattgaaaccaataaagtggaagcagtaagc 213  Q
    ||| ||||||| || | ||||||||| ||||||||||||||||||| ||||| || || ||| |||| || |||| |||||||||||||||||| ||| |    
T  8443701 tcaaagtaatttcgcacggccaaccaattaatagtaccattcaaatgcacacgggtacaattattattaggttgataccaataaagtggaagcattaaac 8443800  T
Q  214 attgaatatttctccaagaactattcccaatgcttacaactttcaccatacctgttgcatcacccatgttcttatacaacttcacacgaaacgctatcac 313  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||      |||||| |||  ||  | ||| ||||||||||||||||||||||||    
T  8443801 attgaatatttctccaagaactattcccaatgcttaaaactttcacca------ttgcattaccgttgcccatatccaacttcacacgaaacgctatcac 8443894  T
Q  314 cttataagtttcagttaaataatcgtatccaaaaaagaacttacgataattacgcggggttaaaacaaattcagattttgtcctagtggctggattccat 413  Q
    ||||||||||||||| ||||||||||| |||||||||||||||  ||| ||||| |||  ||||||||||| ||||||| ||||||||||||| ||||||    
T  8443895 cttataagtttcagtcaaataatcgtaaccaaaaaagaacttagtatacttacgtgggcctaaaacaaatttagattttttcctagtggctgggttccat 8443994  T
Q  414 aaatagatacatccacgaagaggtgaagtattccgatcaagcaagcatagcaatccattgcatgaaccaac 484  Q
    ||| | |  | |  || |  ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8443995 aaacaaagtcgttgaccagcaggtgaagtattccgatcaagcaagcagagcaatccattgcatgaaccaac 8444065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 127 - 484
Target Start/End: Original strand, 8437400 - 8437757
Alignment:
Q  127 gaagggccaaccagttaatagtaccattcaaattcacacaggcactattgttataagattgaaaccaataaagtggaagcagtaagcattgaatatttct 226  Q
    ||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||| |  ||||||||||||||||||| |||| |||||||||| |||    
T  8437400 gaagggccaaccagttaatagtaccattcaaatacacataggaaccattgttataaggtccaaaccaataaagtggaagctgtaaacattgaatatctct 8437499  T
Q  227 ccaagaactattcccaatgcttacaactttcaccatacctgttgcatcacccatgttcttatacaacttcacacgaaacgctatcaccttataagtttca 326  Q
    ||||||||||||||||||||||| ||||||| || ||||| |||||| |||  ||| | ||| |||| ||||||||||||||| ||||||||||||||||    
T  8437500 ccaagaactattcccaatgcttaaaactttccccgtacctcttgcattaccgttgtccatatccaacatcacacgaaacgctaccaccttataagtttca 8437599  T
Q  327 gttaaataatcgtatccaaaaaagaacttacgataattacgcggggttaaaacaaattcagattttgtcctagtggctggattccataaatagatacatc 426  Q
    || ||||||| ||| || ||||||||  | | |||| ||    ||| ||||||||||||||||||||||||||||||||| ||||||||| | |  | |     
T  8437600 gtcaaataatagtaacctaaaaagaaagtgctataactagtttggggtaaaacaaattcagattttgtcctagtggctgggttccataaacaaagccgtt 8437699  T
Q  427 cacgaagaggtgaagtattccgatcaagcaagcatagcaatccattgcatgaaccaac 484  Q
     ||||  ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  8437700 gacgagcaggtgaagctttccgatcaagcaagcatagcaatccattgcatgaaccaac 8437757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 8437307 - 8437357
Alignment:
Q  49 actcggtggagagatcaagcgaaacaatcacatattcatcaacagttatac 99  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||||    
T  8437307 actcggtggagagatcaagcgaaacaatgacaatttcatcaacagttatac 8437357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 484
Target Start/End: Complemental strand, 10460098 - 10460063
Alignment:
Q  449 atcaagcaagcatagcaatccattgcatgaaccaac 484  Q
    ||||| ||||||||||||||||||||||||||||||    
T  10460098 atcaatcaagcatagcaatccattgcatgaaccaac 10460063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 10460426 - 10460379
Alignment:
Q  118 agtaattgcgaagggccaaccagttaatagtaccattcaaattcacac 165  Q
    |||||| | |||||||||||||| |||||||||||||||||| |||||    
T  10460426 agtaatcgtgaagggccaaccagctaatagtaccattcaaatacacac 10460379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 10493228 - 10493181
Alignment:
Q  374 taaaacaaattcagattttgtcctagtggctggattccataaatagat 421  Q
    ||||||||||||||||||||||| |||||  || ||||||||||||||    
T  10493228 taaaacaaattcagattttgtccaagtggtcgggttccataaatagat 10493181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 10553812 - 10553859
Alignment:
Q  118 agtaattgcgaagggccaaccagttaatagtaccattcaaattcacac 165  Q
    |||||| |||||||| |||||||||||| ||||||||||||| |||||    
T  10553812 agtaatcgcgaagggtcaaccagttaattgtaccattcaaatacacac 10553859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 6387961 - 6387911
Alignment:
Q  210 aagcattgaatatttctccaagaactattcccaatgcttacaactttcacc 260  Q
    |||||||||||||||||||||||| ||||||| ||||| | || |||||||    
T  6387961 aagcattgaatatttctccaagaattattccccatgctgaaaattttcacc 6387911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 10460550 - 10460468
Alignment:
Q  12 tcatcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagagatcaagcgaaacaatcacatattcatcaacagt 94  Q
    ||||| |||||  ||||||||||||||||||||| |  ||| | ||||||||| |  ||||||||||||||||  ||||||||    
T  10460550 tcatcgaaaccccgaggcaacaacagctgagtgtatgtctcagaggagagatccaatgaaacaatcacatatttctcaacagt 10460468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 10463829 - 10463787
Alignment:
Q  374 taaaacaaattcagattttgtcctagtggctggattccataaa 416  Q
    ||||||||||||||||| |||||||||||| || |||||||||    
T  10463829 taaaacaaattcagattgtgtcctagtggccgggttccataaa 10463787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 10474776 - 10474734
Alignment:
Q  374 taaaacaaattcagattttgtcctagtggctggattccataaa 416  Q
    ||||||||||||||||| |||||||||||| || |||||||||    
T  10474776 taaaacaaattcagattgtgtcctagtggccgggttccataaa 10474734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 6392313 - 6392264
Alignment:
Q  435 ggtgaagtattccgatcaagcaagcatagcaatccattgcatgaaccaac 484  Q
    |||||| ||| ||| ||||  |||||||||||||||||||||||||||||    
T  6392313 ggtgaactatcccggtcaactaagcatagcaatccattgcatgaaccaac 6392264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 25915445 - 25915524
Alignment:
Q  15 tcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagagatcaagcgaaacaatcacatattcatcaacagt 94  Q
    ||||||||  |||||| ||||| |||||||| | |||| ||||| |||||||||||||||||||||||||  ||||||||    
T  25915445 tcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacagt 25915524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 25901427 - 25901506
Alignment:
Q  15 tcaaaaccttgaggcaacaacagctgagtgtctaactcggtggagagatcaagcgaaacaatcacatattcatcaacagt 94  Q
    ||||||||  |||| | ||||| |||||||| | |||| ||||| |||||||||||||||||||||||||  ||||||||    
T  25901427 tcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacagt 25901506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 25915563 - 25915602
Alignment:
Q  118 agtaattgcgaagggccaaccagttaatagtaccattcaa 157  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  25915563 agtaattgcgaagtgccaaccagttaatagtaccactcaa 25915602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 449 - 483
Target Start/End: Original strand, 25915891 - 25915925
Alignment:
Q  449 atcaagcaagcatagcaatccattgcatgaaccaa 483  Q
    ||||| |||||||||||||||||||||||||||||    
T  25915891 atcaaccaagcatagcaatccattgcatgaaccaa 25915925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 25376910 - 25376861
Alignment:
Q  116 atagtaattgcgaagggccaaccagttaatagtaccattcaaattcacac 165  Q
    ||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  25376910 atagtaattgcgaagggccaaccaggtaatagtaccactcaaatacacac 25376861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 412
Target Start/End: Original strand, 50645985 - 50646017
Alignment:
Q  380 aaattcagattttgtcctagtggctggattcca 412  Q
    |||||| ||||||||||||||||||||||||||    
T  50645985 aaattcggattttgtcctagtggctggattcca 50646017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University