View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16436_high_1 (Length: 345)
Name: NF16436_high_1
Description: NF16436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16436_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 26816347 - 26816019
Alignment:
| Q |
1 |
ttgattaccgtgaacttgtgttgcaattataatcttgacgaagttactaaatttgtttctcattttgcaggtcattctatttggttatcttttgggttct |
100 |
Q |
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| T |
26816347 |
ttgattaccgtgaacttgttttgcaattataatcttgacgaagttactaaatttgtttctcattttgcaggtcattctatttagttatcttttgggttct |
26816248 |
T |
|
| Q |
101 |
ctttgaaaataccatagctctacatcgaacaaaagcaacaattattggtctactagagactagaagagtgaatgaatggattgtcactgaaaaacttgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26816247 |
ctttgaaaataccatagctctacatcgaacaaaagcaacaattattggtctactagagactagtagagtgaatgaatggattgtcactgaaaaacttgga |
26816148 |
T |
|
| Q |
201 |
gatgctctcaaaagtaaagttggtggtaaaggaatcaaaaagcctcgattaaagatagcagacaggtaaaataatgcgtaaaatacaattctcatgcata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26816147 |
gatgctctcaaaagtaaagttggtggtaaaggaatcaaaaagcctcgattaaagatagcagacaggtaaaataatgcgtaaaatacaattctcatgcata |
26816048 |
T |
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| Q |
301 |
attattttcttcttcattctgcatatttt |
329 |
Q |
| |
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||||||||||||||| ||||||||||||| |
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| T |
26816047 |
attattttcttcttctttctgcatatttt |
26816019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 52 - 271
Target Start/End: Complemental strand, 26789466 - 26789247
Alignment:
| Q |
52 |
tttgtttctcattttgcaggtcattctatttggttatcttttgggttctctttgaaaataccatagctctacatcgaacaaaagcaacaattattggtct |
151 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26789466 |
tttgtttctcatttttcaggtcattctatttagttatcttttgggttctctttgaaaataccatagctctacatcgaacaaaagcaacaattattggtct |
26789367 |
T |
|
| Q |
152 |
actagagactagaagagtgaatgaatggattgtcactgaaaaacttggagatgctctcaaaagtaaagttggtggtaaaggaatcaaaaagcctcgatta |
251 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||||||||| |||||| |
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| T |
26789366 |
gctagagactagtagagtgaatgaatggattgtcactgaaaaacttggagatgctctcaagggtaaagatggtggtaaagaactcaaaaagcttcgattt |
26789267 |
T |
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| Q |
252 |
aagatagcagacaggtaaaa |
271 |
Q |
| |
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|| || | |||||||||||| |
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| T |
26789266 |
aaaattgtagacaggtaaaa |
26789247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 26829971 - 26829766
Alignment:
| Q |
63 |
ttttgcaggtcattctatttggttatcttttgggttctctttgaaaataccatagctctacatcgaacaaaagcaacaattattggtctactagagacta |
162 |
Q |
| |
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||||||||||||||| |||| || |||||||| || | || || |||||||| |||| ||||||||||| ||||| |||||||||||||||||| ||| |
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| T |
26829971 |
ttttgcaggtcattccatttacttgtcttttggattttattcgagaataccatgtctcttcatcgaacaaaggcaacgattattggtctactagaggcta |
26829872 |
T |
|
| Q |
163 |
gaagagtgaatgaatggattgtcactgaaaaacttggagatgctctcaaaagtaaagttggtggtaaaggaatcaaaaagcctcgattaaagatagcaga |
262 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||| ||||||||| |||||| | ||| | ||| |
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| T |
26829871 |
gtagagtgaatgaatggattgtcactgaaaaacttggagatgctttcaagggtaaagctagtggtaaaggactcaaaaagcttcgatttaggattggaga |
26829772 |
T |
|
| Q |
263 |
caggta |
268 |
Q |
| |
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|||||| |
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|
| T |
26829771 |
caggta |
26829766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 26783129 - 26782937
Alignment:
| Q |
21 |
ttgcaattataatcttgacgaagttact-aaatttgtttctcattttg----caggtcattctatttggttatcttttgggttctctttgaaaataccat |
115 |
Q |
| |
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||||||||| |||||||| ||||||||| |||||||||||||||||| ||||||||| |||| ||| | |||||| |||||||||| |||||||| |
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| T |
26783129 |
ttgcaattagaatcttgatgaagttactcaaatttgtttctcattttattttcaggtcattgcatttagttgtattttggattctctttgagaataccat |
26783030 |
T |
|
| Q |
116 |
agctctacatcgaacaaaagcaacaattattggtctactagagactagaagagtgaatgaatggattgtcactgaaaaacttggagatgctct |
208 |
Q |
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|| || ||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
26783029 |
gtctttaaatcgagcaaaggcaacaattattggtatactagagactagtagagtgaatgaatggattgtcacagaaaaacttggaaatgctct |
26782937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 41920804 - 41920927
Alignment:
| Q |
88 |
tcttttgggttctctttgaaaataccatagctctacatcgaacaaaagcaacaattattggtctactagagactagaagagtgaatgaatggattgtcac |
187 |
Q |
| |
|
|||||||| |||| ||||| ||| ||| |||| ||| || |||| ||||| ||||||||||||| ||| |||| |||||||||||||||||||||| |
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| T |
41920804 |
tcttttggattctatttgagaatgtcatgtctctgcatagagcaaaggcaactgttattggtctactggaggctagtcgagtgaatgaatggattgtcac |
41920903 |
T |
|
| Q |
188 |
tgaaaaacttggagatgctctcaa |
211 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
41920904 |
tgagaaacttggagatgctctcaa |
41920927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 2301218 - 2301259
Alignment:
| Q |
167 |
agtgaatgaatggattgtcactgaaaaacttggagatgctct |
208 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
2301218 |
agtgaatgaatggattgtcactaaaaaacttggaaatgctct |
2301259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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