View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16437_high_2 (Length: 442)
Name: NF16437_high_2
Description: NF16437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16437_high_2 |
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| [»] scaffold0710 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 51820877 - 51821304
Alignment:
| Q |
1 |
gatcagttatgattgcaggagggactttaagcaaaggactaaacagaggattgggaacttcattagcaggattgttggcattttttattgagtatcttgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51820877 |
gatcagttatgattgcaggagggactttaagcaaaggactaaacagaggattgggaacttcgttagcaggattgttggcattttttattgagtatcttgc |
51820976 |
T |
|
| Q |
101 |
agataaccctgatcagatttttcgagcaattttcattggtgctgcggtttttcttttaggcaagtatttattatatcatgaaagaaaattgacaattgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |
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| T |
51820977 |
agataaccctgatcagatttttcgagcaattttcattggtgctgcggtttttcttttaggtaagtctttattatatcatgaaagaaaattgactcttgct |
51821076 |
T |
|
| Q |
201 |
atagtaatagtacttacatttgtttgttgaaattttaagagaagcttaatttgaggctggagcttcctaaatatttttcttaaccattgtttcactgttt |
300 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51821077 |
ttagtagtagtacttacatttgtttgttgacattttaagagaagcttaatttgtggctggagcttcctaaatatttttcttggccattgtttcactgttt |
51821176 |
T |
|
| Q |
301 |
gtttgcaggagctgcagctacatttgttagattcattccctatatcaagaagaattatgactatggtgttatggtatttctcttgacctttaatttgata |
400 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51821177 |
gtttgcaggagctgcagctacatttgtcagattcattccctatatcaagaagaattatgactatggtgttatggtatttctcttgacctttaatttgata |
51821276 |
T |
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| Q |
401 |
attgtatcgagttaccgtgttgataatg |
428 |
Q |
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| T |
51821277 |
attgtatcgagttaccgtgttgataatg |
51821304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 255 - 427
Target Start/End: Original strand, 51861089 - 51861262
Alignment:
| Q |
255 |
ggctggagcttcctaaatatttttcttaaccattgtttcactgtttgttt-gcaggagctgcagctacatttgttagattcattccctatatcaagaaga |
353 |
Q |
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||||||||||||| | | |||| ||||||||||||||||| || |||| | ||||||| | ||||| | ||| || |||||||| ||||| ||||||| |
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| T |
51861089 |
ggctggagcttccctagtgttttgcttaaccattgtttcacctttggttttgtaggagcttctgctacttatgtaaggttcattccttatataaagaaga |
51861188 |
T |
|
| Q |
354 |
attatgactatggtgttatggtatttctcttgacctttaatttgataattgtatcgagttaccgtgttgataat |
427 |
Q |
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| T |
51861189 |
attatgactatggtgttatgatatttctcttgacctttaatttgatgattgtatcaagttaccgcgtagataat |
51861262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 305 - 428
Target Start/End: Original strand, 51850988 - 51851111
Alignment:
| Q |
305 |
gcaggagctgcagctacatttgttagattcattccctatatcaagaagaattatgactatggtgttatggtatttctcttgacctttaatttgataattg |
404 |
Q |
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||||||||||||||||| | ||| |||||||| || ||||| ||||| || || || |||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
51850988 |
gcaggagctgcagctacctatgtcagattcatcccttatataaagaaaaactacgattatggtgttatgatatttctgttgacctttaatttgataattg |
51851087 |
T |
|
| Q |
405 |
tatcgagttaccgtgttgataatg |
428 |
Q |
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|||| |||||||| |||||||||| |
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| T |
51851088 |
tatcaagttaccgcgttgataatg |
51851111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 51860852 - 51861018
Alignment:
| Q |
6 |
gttatgattgcaggagggactttaagcaaaggactaaacagaggattgggaacttcattagcaggattgttggcattttttattgagtatcttgcagata |
105 |
Q |
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||||||||||||||||| || ||| |||||||||| || |||||||| || || | ||| ||||||||||||||||| |||||||||||||||||| |
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| T |
51860852 |
gttatgattgcaggaggaaccttatgcaaaggacttaatagaggattagggacgctgtcagcgggattgttggcatttttaattgagtatcttgcagatg |
51860951 |
T |
|
| Q |
106 |
accctgatcagatttttcgagcaattttcattggtgctgcggtttttcttttaggcaagtatttatt |
172 |
Q |
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|||| || |||||||||||| | |||||||||||||| |||||| ||||||| ||| ||||||| |
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| T |
51860952 |
cacctggtcgtatttttcgagcagtattcattggtgctgcagtttttgttttaggtaagcatttatt |
51861018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 51850417 - 51850570
Alignment:
| Q |
7 |
ttatgattgcaggagggactttaagcaaaggactaaacagaggattgggaacttcattagcaggattgttggcattttttattgagtatcttgcagataa |
106 |
Q |
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||||||||| ||| || || ||| ||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||| ||||||||||||| |
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| T |
51850417 |
ttatgattgtagggggaaccttatgcaaaggactaaatagaggattgggaactttgttagcaggatcattggcattctttattcggtatcttgcagatgt |
51850516 |
T |
|
| Q |
107 |
ccctgatcagatttttcgagcaattttcattggtgctgcggtttttcttttagg |
160 |
Q |
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|||| |||||||||| ||||||||||| |||||||| |||||| ||||||| |
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| T |
51850517 |
tcctggccagatttttcatgcaattttcatcggtgctgcagtttttattttagg |
51850570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 51379756 - 51379660
Alignment:
| Q |
92 |
gtatcttgcagataaccctgatcagatttttcgagcaattttcattggtgctgc-ggtttttcttttaggcaagtatttattatatcatgaaagaaa |
187 |
Q |
| |
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||||||||||||| ||||| |||||||||||||| |||| || |||||||||| |||||| |||||| || |||||||| |||||| |||||| |
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| T |
51379756 |
gtatcttgcagatgtccctggtcagatttttcgagaaattgtcgttggtgctgcacttttttcgtttagggaaacatttattacatcatgtaagaaa |
51379660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 255 - 427
Target Start/End: Original strand, 5048 - 5221
Alignment:
| Q |
255 |
ggctggagcttcctaaatatttttcttaaccattgtttcactgtttgttt-gcaggagctgcagctacatttgttagattcattccctatatcaagaaga |
353 |
Q |
| |
|
||||||||||||| | | |||| ||||||||||||||||| || |||| | ||||||| | ||||| | ||| || |||||||| ||||| ||||||| |
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| T |
5048 |
ggctggagcttccctagtgttttgcttaaccattgtttcacctttggttttgtaggagcttctgctacttatgtaaggttcattccttatataaagaaga |
5147 |
T |
|
| Q |
354 |
attatgactatggtgttatggtatttctcttgacctttaatttgataattgtatcgagttaccgtgttgataat |
427 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| || |||||| |
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| T |
5148 |
attatgactatggtgttatgatatttctcttgacctttaatttgatgattgtatcaagttaccgcgtagataat |
5221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 4811 - 4977
Alignment:
| Q |
6 |
gttatgattgcaggagggactttaagcaaaggactaaacagaggattgggaacttcattagcaggattgttggcattttttattgagtatcttgcagata |
105 |
Q |
| |
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||||||||||||||||| || ||| |||||||||| || |||||||| || || | ||| ||||||||||||||||| |||||||||||||||||| |
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| T |
4811 |
gttatgattgcaggaggaaccttatgcaaaggacttaatagaggattagggacgctgtcagcgggattgttggcatttttaattgagtatcttgcagatg |
4910 |
T |
|
| Q |
106 |
accctgatcagatttttcgagcaattttcattggtgctgcggtttttcttttaggcaagtatttatt |
172 |
Q |
| |
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|||| || |||||||||||| | |||||||||||||| |||||| ||||||| ||| ||||||| |
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| T |
4911 |
cacctggtcgtatttttcgagcagtattcattggtgctgcagtttttgttttaggtaagcatttatt |
4977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 40633641 - 40633721
Alignment:
| Q |
24 |
actttaagcaaaggactaaacagaggattgggaacttcattagcaggattgttggcattttttattgagtatcttgcagat |
104 |
Q |
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|||||| ||||||| || || ||||||||||| || | |||||||||||| ||||||||| || |||| ||| |||||||| |
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| T |
40633641 |
actttatgcaaagggctgaatagaggattggggacattattagcaggattattggcatttcttcttgattatgttgcagat |
40633721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 40634164 - 40634256
Alignment:
| Q |
332 |
ttcattccctatatcaagaagaattatgactatggtgttatggtatttctcttgacctttaatttgataattgtatcgagttaccgtgttgat |
424 |
Q |
| |
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|||||||| ||||| |||||||||||||| |||||||| | |||| ||||| ||||| || ||| ||| ||| ||||||||||| |||||| |
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| T |
40634164 |
ttcattccttatataaagaagaattatgattatggtgtggttatattcctcttaaccttcaacttgttaactgtttcgagttaccgggttgat |
40634256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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