View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16437_high_3 (Length: 403)
Name: NF16437_high_3
Description: NF16437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16437_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 37753477 - 37753103
Alignment:
| Q |
19 |
caatgtaattgaactcaaaaccattactaatagattgatattaaactaaagtatgagatgaaatttagctgagtaggaccaaaaagtcaattttggttct |
118 |
Q |
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| T |
37753477 |
caatgtaattgaactcaaaaccattactaatagattgatattaaactaatgtatgagatgaaatttagctgagtaggaccaaaaagtcaattttggttct |
37753378 |
T |
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| Q |
119 |
tggctaattatttttcacaagggtgtgcattgtactggtatcaatgtctagtcatatgtcatgcaacccttgtttaatttatatgatatgatatatggac |
218 |
Q |
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| T |
37753377 |
tggctaattctttttcacaagggtgtgcattgtactggtatcaatgtctagtcatatgtcatgcaacccttgtttaatttatatgatatgatatatggac |
37753278 |
T |
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| Q |
219 |
aacatgggtgggacaaacaaaccatgtggaagataatcttattctgccttttccttgttcaagtttcaactaaatcaaaagcactgtctgactaggtttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37753277 |
aacatgggtgggacaaacaaaccatgtggaagataatcttattctgccttttccttgttcaagtttcaactaaatcaaaagcactgtctgactaggtttc |
37753178 |
T |
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| Q |
319 |
agccaaaggcaaagcagcttaagagagagaaatagaaagtggttgcacattcacgtttgataagggtgatgatgt |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37753177 |
agccaaaggcaaagcagcttaagagagagaaatagaaagtggttgcacattcacgtttgataagggtgatgatgt |
37753103 |
T |
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