View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16437_high_6 (Length: 357)
Name: NF16437_high_6
Description: NF16437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16437_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 336
Target Start/End: Original strand, 35105323 - 35105637
Alignment:
| Q |
22 |
gctgtagactcatcacatgagtggaaagttgttcctgatatttggagatcttctgctgaaaaatatggtgataaagtagccttagtagatcaatatcatc |
121 |
Q |
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| T |
35105323 |
gctgtagactcatcacatgagtggaaagttgttcctgatatttggagatcttctgctgaaaaatatggtgataaagtagccttagtagatcaatatcatc |
35105422 |
T |
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| Q |
122 |
atcctccttcaactatcacatataatcaggtcnnnnnnnnnnnnnnagcactggaaaaaataagttactattttttatcctttatattgttcttatactt |
221 |
Q |
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| T |
35105423 |
atcctccttcaactatcacatataatcaggtcttttttttttctttagcactagaaaaaataagttgctattttttatcctttatattgttcttatactt |
35105522 |
T |
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| Q |
222 |
tgttttggcatctattgcagttggagcaggcaattttggattttgcagaaggcctaagagttattggagtaaggccggatgaaaagcttgcactttttgc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35105523 |
tgttttggcatctattgcagttggagcaggcaattttggattatgcagaaggcctaagagttattggagtaaggccggatgaaaagcttgcactttttgc |
35105622 |
T |
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| Q |
322 |
agataattcatgtcg |
336 |
Q |
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||||||||||||||| |
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| T |
35105623 |
agataattcatgtcg |
35105637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 38123143 - 38123029
Alignment:
| Q |
38 |
atgagtggaaagttgttcctgatatttggagatcttctgctgaaaaatatggtgataaagtagccttagtagatcaatatcatcatcctccttcaactat |
137 |
Q |
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| T |
38123143 |
atgagtggaaagctgttcctgatatttggagaacttctgcagagaagtatggtgataaagtagctttggtagatcaatatcatgatcctccttcaactat |
38123044 |
T |
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| Q |
138 |
cacatataatcaggt |
152 |
Q |
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| T |
38123043 |
gacatacaaacaggt |
38123029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 38136355 - 38136256
Alignment:
| Q |
38 |
atgagtggaaagttgttcctgatatttggagatcttctgctgaaaaatatggtgataaagtagccttagtagatcaatatcatcatcctccttcaactat |
137 |
Q |
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||||||||||| |||||||||||||||||| ||||||||| || |||||||||||| | || | |||||| ||||||| |||||||||||||||| |
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| T |
38136355 |
atgagtggaaaacagttcctgatatttggagaagttctgctgagaagtatggtgataaaattgctctcatagatccatatcatgatcctccttcaactat |
38136256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 38136028 - 38135932
Alignment:
| Q |
240 |
agttggagcaggcaattttggattttgcagaaggcctaagagttattggagtaaggccggatgaaaagcttgcactttttgcagataattcatgtcg |
336 |
Q |
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|||||||| | ||||| ||||| ||||| || ||| | ||||||||||||||||| || |||||||| |||| |||||||| |||||||| ||||| |
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| T |
38136028 |
agttggaggatgcaatattggactttgctgagggcttgagagttattggagtaagtcccaatgaaaagattgcgctttttgctgataattcttgtcg |
38135932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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