View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16437_low_1 (Length: 731)

Name: NF16437_low_1
Description: NF16437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16437_low_1
NF16437_low_1
[»] chr8 (4 HSPs)
chr8 (15-687)||(41015105-41015777)
chr8 (573-700)||(1605267-1605393)
chr8 (563-698)||(11142697-11142831)
chr8 (563-692)||(1662526-1662654)
[»] chr1 (6 HSPs)
chr1 (574-698)||(4328782-4328906)
chr1 (563-699)||(35161947-35162082)
chr1 (563-692)||(29395391-29395519)
chr1 (563-692)||(30410795-30410923)
chr1 (617-700)||(41866976-41867059)
chr1 (617-692)||(28549359-28549434)
[»] chr7 (4 HSPs)
chr7 (153-688)||(34575602-34576145)
chr7 (573-692)||(13946647-13946765)
chr7 (617-684)||(33865605-33865671)
chr7 (572-698)||(20389908-20390033)
[»] chr3 (4 HSPs)
chr3 (563-692)||(4865120-4865248)
chr3 (563-694)||(55041454-55041584)
chr3 (597-692)||(30766014-30766108)
chr3 (617-684)||(23217047-23217113)
[»] chr2 (1 HSPs)
chr2 (418-692)||(17830842-17831116)
[»] chr4 (2 HSPs)
chr4 (617-694)||(34703765-34703842)
chr4 (617-689)||(43046273-43046345)
[»] chr6 (5 HSPs)
chr6 (618-698)||(6309166-6309246)
chr6 (617-684)||(11074870-11074936)
chr6 (563-689)||(32444477-32444602)
chr6 (661-698)||(31112468-31112505)
chr6 (563-689)||(11178361-11178486)
[»] scaffold0524 (1 HSPs)
scaffold0524 (663-698)||(5126-5161)
[»] chr5 (1 HSPs)
chr5 (661-694)||(37720060-37720093)


Alignment Details
Target: chr8 (Bit Score: 625; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 15 - 687
Target Start/End: Complemental strand, 41015777 - 41015105
Alignment:
Q  15 atagggagcataacaaaagcttgtacaaaataaaccagcatgataagcatatgattgtgtatatattttaaaaacttcgcatgattaaaacaacagtagt 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41015777 atagggagcataacagaagcttgtacaaaataaaccagcatgataagcatatgattgtgtatatattttaaaaactttgcatgattaaaacaacagtagt 41015678  T
Q  115 ctactcccattcaacatcatgctcaatcatattcctgtctatgtcagttaatggatttggatccaagggtgctgcaagaaacagataacaacataataag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015677 ctactcccattcaacatcatgctcaatcatattcctgtctatgtcagttaatggatttggatccaagggtgctgcaagaaacagataacaacataataag 41015578  T
Q  215 cgtgttattcatagatagtcaaaccaaaacgcaaattcagaatacaaaatgatgtaagatgaaaggtaatacatggccgttaacatctggtatgacaaaa 314  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41015577 cgtgttattcatagatagtcaaaccaaaacgcaaatttagaatacaaaatgatgtaagatgaaaggtaatacatggctgttaacatctggtatgacaaaa 41015478  T
Q  315 aggtctggatgttattgtgtgccatgacagaatgggagagattggaagtgatgggaaatcagaaaggtgattcatatttatacaatcatattgtgcattc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015477 aggtctggatgttattgtgtgccatgacagaatgggagagattggaagtgatgggaaatcagaaaggtgattcatatttatacaatcatattgtgcattc 41015378  T
Q  415 cattggtaactgttatattgaaaaattagaaacattgattagcaatttagagactcttcatattcataggcagaatcggcgcaaagagtcttgaaaaatg 514  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  41015377 cattggtaactgttacattgaaaaattagaaacattgattaccaattcagagactcttcatattcataggcagaatcagcgcaaagattcttgaaaaatg 41015278  T
Q  515 aaaagccacatttaatgggcatgaaggattgtttagagcgctaggttgaagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcac 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41015277 aaaagccacatttaatgggcatgaaggattgtttagagcgctaggttgaagggtactggatttgaaactcaaaaatggcattaaatgtggttaagtgcac 41015178  T
Q  615 aattttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataata 687  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  41015177 aattttcccgctctaaatcaaggattagagttttgaaatagttatgtgcattgtactttaggattagataata 41015105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 573 - 700
Target Start/End: Original strand, 1605267 - 1605393
Alignment:
Q  573 gatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactt 672  Q
    ||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||  |||| || | ||||| ||| ||    
T  1605267 gatttgaaattcaaaaatgtcattaagtgtggttaa-tgcataattttcccgctctaaatcaaggattagggttttacaatagttgtatgcatcgtagtt 1605365  T
Q  673 taggattagataataaggataaggattt 700  Q
    |||||||||||||||| |||||||||||    
T  1605366 taggattagataataatgataaggattt 1605393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 563 - 698
Target Start/End: Complemental strand, 11142831 - 11142697
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||| |  ||||||||||||||| ||  ||| ||||||||||||| |||  |||||||    
T  11142831 aagggtacatgatttgaaattcaaaaatgccattaaatgtggttaaata-acaattttcccgctcaaagccaatgattagggttttgcaattgttatgtg 11142733  T
Q  663 cattgtactttaggattagataataaggataaggat 698  Q
    ||||||| ||||||||||||||||||||||||||||    
T  11142732 cattgtagtttaggattagataataaggataaggat 11142697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 563 - 692
Target Start/End: Original strand, 1662526 - 1662654
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatc-aaggattagggttttgaaatacttatgt 661  Q
    ||||||||  ||||||||||||||||||| |||||||| ||||||| | |||||||||||||||| ||||| |||||||||||||||| |||  || |||    
T  1662526 aagggtacatgatttgaaattcaaaaatgacattaaatatggttaaat-cacaattttcccgctc-aaatctaaggattagggttttgcaattgttgtgt 1662623  T
Q  662 gcattgtactttaggattagataataaggat 692  Q
    |||||||| ||||||||||||||||||||||    
T  1662624 gcattgtagtttaggattagataataaggat 1662654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 3e-47; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 574 - 698
Target Start/End: Original strand, 4328782 - 4328906
Alignment:
Q  574 atttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtacttt 673  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | || |||||||||||||||    
T  4328782 atttgaaattcaaaattagcattaaatgtggttaagtgcacaattttcccgctcaaaaccaaggattagggttttgaaaaagttgtgtgcattgtacttt 4328881  T
Q  674 aggattagataataaggataaggat 698  Q
    |||||||||||||||||||||||||    
T  4328882 aggattagataataaggataaggat 4328906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 563 - 699
Target Start/End: Complemental strand, 35162082 - 35161947
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  ||||||||||||||||||| |||||||| ||||||| | || ||||||||||||| ||  ||||||||||||||||| |||  || ||||    
T  35162082 aagggtacatgatttgaaattcaaaaatgccattaaatttggttaaat-cataattttcccgctcaaatccaaggattagggttttgcaattgttgtgtg 35161984  T
Q  663 cattgtactttaggattagataataaggataaggatt 699  Q
    ||||||| |||||||||||||||||||||||||||||    
T  35161983 cattgtagtttaggattagataataaggataaggatt 35161947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 563 - 692
Target Start/End: Original strand, 29395391 - 29395519
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||  ||| ||||||||||||| |||  || ||||    
T  29395391 aagggtacatgatttgaaattcaaaaatgtcattaaatgtggttaaat-cacaattttcccgctcaaagccaatgattagggttttgcaattgttgtgtg 29395489  T
Q  663 cattgtactttaggattagataataaggat 692  Q
    ||||||| ||||||||||||||||||||||    
T  29395490 cattgtagtttaggattagataataaggat 29395519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 563 - 692
Target Start/End: Original strand, 30410795 - 30410923
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||  ||||||||||||||||| |||  || ||||    
T  30410795 aagggtacatgatttgaaattcaaaaatgccattaaatgtggttaaat-cacaattttcccgctcaaagccaaggattagggttttgcaattgttgtgtg 30410893  T
Q  663 cattgtactttaggattagataataaggat 692  Q
    ||||||| ||||| ||||||||||||||||    
T  30410894 cattgtagtttagaattagataataaggat 30410923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 617 - 700
Target Start/End: Complemental strand, 41867059 - 41866976
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataaggataaggattt 700  Q
    ||||||||||| ||||||||||||||||||||  |   ||| |||||||||||| ||||||||||| |||||||||||||||||    
T  41867059 ttttcccgctcaaaatcaaggattagggttttttaggtcttgtgtgcattgtacattaggattagaaaataaggataaggattt 41866976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 617 - 692
Target Start/End: Original strand, 28549359 - 28549434
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataaggat 692  Q
    ||||||||||| ||||||||||||||||||||  |   ||| |||||||||||| ||||||||||| |||||||||    
T  28549359 ttttcccgctcaaaatcaaggattagggttttttaggtcttgtgtgcattgtacattaggattagaaaataaggat 28549434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 153 - 688
Target Start/End: Complemental strand, 34576145 - 34575602
Alignment:
Q  153 ctatgtcagttaatggatttggatccaagggtgctgcaagaaacagataacaacataataagcgtgttattcata--------gatagtcaaaccaaaac 244  Q
    |||| |||||||||||||| ||||||||||| ||||||| ||| | ||| |||||||| || |||||||||||||        |||||||||   |||||    
T  34576145 ctatatcagttaatggattgggatccaagggcgctgcaacaaaaatataccaacataagaaacgtgttattcataaatacatagatagtcaataaaaaac 34576046  T
Q  245 gcaaattcagaatacaaaatgatgtaagatgaaaggtaatacatggccgttaacatctggtatgacaaaaaggtctggatgttattgtgtgccatgacag 344  Q
    |   ||||| || |||||||||||| |||   ||||||||||||| |  |||||||||||| |||||||||  ||||||| ||||| |   ||||| ||     
T  34576045 gattattcaaaaaacaaaatgatgtcagaattaaggtaatacatgcctattaacatctggtgtgacaaaaaattctggatattatttt---ccatggcaa 34575949  T
Q  345 aatgggagagattggaagtgatgggaaatcaga--aaggtgattcatatttatacaatcatattgtgcattccattggtaactgttatattgaaaaatta 442  Q
    |||||||  ||||||||||||||||||  ||    ||  | | |||||||||||||||||||| ||||||   | |||||||||||| |||| ||| ||     
T  34575948 aatgggac-gattggaagtgatgggaacgcatgccaaaatcaatcatatttatacaatcatatggtgcatggaaatggtaactgttacattggaaagttg 34575850  T
Q  443 gaaacat--tgattagcaatttagagactcttcatattcataggcagaatcggcgcaaagagtcttgaaaaatgaaaagccacatttaatgggcatgaag 540  Q
    |||||||  |||||| |||  ||||||||||||||| ||||   |||| ||   ||||| ||||| ||||||  |||     |||||||||| | ||| |    
T  34575849 gaaacatattgattaccaacgtagagactcttcatagtcatgtacagattccatgcaaatagtctggaaaaactaaagagtgcatttaatggccgtgagg 34575750  T
Q  541 gattgtttagagcgctaggt--tgaagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaagga 638  Q
    ||| |||||  |||||| ||  | |||||||| ||||||||||||||||||||  ||||||||||||| | | |||| ||||||||||| ||  ||||||    
T  34575749 gatagtttaccgcgctatgtcattaagggtacaggatttgaaattcaaaaatgcaattaaatgtggtttaat-caca-ttttcccgctcaaatgcaagga 34575652  T
Q  639 ttagggttttgaaatacttatgtgcattgtactttaggattagataataa 688  Q
    ||||||||||| ||   || |||||||||||  |||||||||||||||||    
T  34575651 ttagggttttgcaaatgttgtgtgcattgtaggttaggattagataataa 34575602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 573 - 692
Target Start/End: Complemental strand, 13946765 - 13946647
Alignment:
Q  573 gatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactt 672  Q
    ||||||||||||||||||  |||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||| |||  || ||||||||||| ||    
T  13946765 gatttgaaattcaaaaatcccattaaatgtggttaaat-cacaattttcccgctcaaaaccaaggattagggttttgcaattgttgtgtgcattgtagtt 13946667  T
Q  673 taggattagataataaggat 692  Q
    ||||||||||||||||||||    
T  13946666 taggattagataataaggat 13946647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 684
Target Start/End: Complemental strand, 33865671 - 33865605
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagata 684  Q
    ||||||||||||||||||| |||||||||||| |  | ||| |||||||||||| |||||||||||||    
T  33865671 ttttcccgctctaaatcaaagattagggtttttaggt-cttgtgtgcattgtacattaggattagata 33865605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 698
Target Start/End: Complemental strand, 20390033 - 20389908
Alignment:
Q  572 ggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtact 671  Q
    ||||||||||||  ||||||||||||| || ||| |   ||| ||||||||||||| |||   ||||||||||||||  |    || | ||||||||| |    
T  20390033 ggatttgaaatttgaaaatggcattaagtgaggt-attagcaaaattttcccgctcaaaacataggattagggttttagatgttttgtttgcattgtagt 20389935  T
Q  672 ttaggattagataataaggataaggat 698  Q
    |||||||||||||||||||||||||||    
T  20389934 ttaggattagataataaggataaggat 20389908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 6e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 563 - 692
Target Start/End: Complemental strand, 4865248 - 4865120
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||| |||  || ||||    
T  4865248 aagggtacatgatttgaaattcaaaaatgccattaaatgtggttaaat-cacaattttcccgctcaaaaccaaggattagggttttgcaattgttgtgtg 4865150  T
Q  663 cattgtactttaggattagataataaggat 692  Q
    ||||||| ||||||||||||||||||||||    
T  4865149 cattgtagtttaggattagataataaggat 4865120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 563 - 694
Target Start/End: Original strand, 55041454 - 55041584
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||| | |||||||||||||||| ||  ||||||||||||||||| |||  || ||||    
T  55041454 aagggtacatgatttgaaattcaaaaatgccattaaatgtggttaaat-cacaattttcccgctcaaagccaaggattagggttttgcaattgttgtgtg 55041552  T
Q  663 cattgtactttaggattagataataaggataa 694  Q
    ||||||| ||||||||||||||||||||||||    
T  55041553 cattgtagtttaggattagataataaggataa 55041584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 597 - 692
Target Start/End: Original strand, 30766014 - 30766108
Alignment:
Q  597 aaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataaggat 692  Q
    |||||| |||||| ||| ||||||||||||||||||||  ||||||||||||  |  | || ||||||||||| ||||||||||||||||||||||    
T  30766014 aaatgtagttaag-gcaaaattttcccgctctaaatcatagattagggttttagatgatttgtgtgcattgtagtttaggattagataataaggat 30766108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 684
Target Start/End: Original strand, 23217047 - 23217113
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagata 684  Q
    |||||||||||||||||||||||||||||||| |  | ||| |||||||||||| |||||||| ||||    
T  23217047 ttttcccgctctaaatcaaggattagggtttttaggt-cttctgtgcattgtacattaggattggata 23217113  T

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Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 418 - 692
Target Start/End: Complemental strand, 17831116 - 17830842
Alignment:
Q  418 tggtaactgttatattgaaaaattagaaacattgattagcaatttagagactcttcatattcataggcagaatcggcgcaaagagtcttgaaaaatgaaa 517  Q
    |||||||||||  |||| ||| |  |||||||||||||||||| ||||||||||||||| ||||   |||| |    ||||| ||| | ||||||  |||    
T  17831116 tggtaactgtttcattggaaagtaggaaacattgattagcaatgtagagactcttcatagtcatgtacagatttcatgcaaatagtttggaaaaactaaa 17831017  T
Q  518 agccacatttaatgggcatgaaggattgtttagagcgctaggt--tgaagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcaca 615  Q
         |||||||||| | ||| |||| |||||  |||||| ||  | |||||||  ||||||||||||||||||||  ||||||| ||||||| | |||     
T  17831016 gagtgcatttaatggccgtgagggatagtttaccgcgctatgtcattaagggtataggatttgaaattcaaaaatgcaattaaatatggttaaat-cac- 17830919  T
Q  616 attttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataaggat 692  Q
    |||||||||||| ||  ||||||||||||||||| ||   || |||||||||||  ||| |||||||||||||||||    
T  17830918 attttcccgctcaaatgcaaggattagggttttgcaaatgttgtgtgcattgtaggttatgattagataataaggat 17830842  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 617 - 694
Target Start/End: Complemental strand, 34703842 - 34703765
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataaggataa 694  Q
    ||||||||||| ||||||||||||||||||||  |   ||| |||||||||||| ||||||||||| |||||||||||    
T  34703842 ttttcccgctcaaaatcaaggattagggttttttaggtcttgtgtgcattgtacattaggattagaaaataaggataa 34703765  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 689
Target Start/End: Original strand, 43046273 - 43046345
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataag 689  Q
    |||| |||||| ||||| ||| ||||||||||||||| ||| | | |||||||| ||||||||| ||||||||    
T  43046273 tttttccgctcaaaatctaggtttagggttttgaaatgcttgtttacattgtacattaggattaaataataag 43046345  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 618 - 698
Target Start/End: Original strand, 6309166 - 6309246
Alignment:
Q  618 tttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagataataaggataaggat 698  Q
    |||||||||| ||||| ||| ||| ||||||||||  ||| | | |||||||| |||||||||||||||||||||||||||    
T  6309166 tttcccgctcaaaatctaggtttaaggttttgaaaggcttgtttacattgtacattaggattagataataaggataaggat 6309246  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 617 - 684
Target Start/End: Complemental strand, 11074936 - 11074870
Alignment:
Q  617 ttttcccgctctaaatcaaggattagggttttgaaatacttatgtgcattgtactttaggattagata 684  Q
    |||||||||||||||||||||||||||||||| |  | ||| |||||||||||| |||||||||||||    
T  11074936 ttttcccgctctaaatcaaggattagggtttttaggt-cttgtgtgcattgtacattaggattagata 11074870  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 563 - 689
Target Start/End: Complemental strand, 32444602 - 32444477
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    |||| ||| ||||||||||||||||||||||||||| || ||||||  |||  | |||||||||| |||   |||||||||||||| ||    || | ||    
T  32444602 aaggatacaggatttgaaattcaaaaatggcattaagtgaggttaa-agcattagtttcccgctcaaaacttaggattagggtttttaatgttttgtttg 32444504  T
Q  663 cattgtactttaggattagataataag 689  Q
    ||||||| |||||||||||||||||||    
T  32444503 cattgtagtttaggattagataataag 32444477  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 698
Target Start/End: Original strand, 31112468 - 31112505
Alignment:
Q  661 tgcattgtactttaggattagataataaggataaggat 698  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  31112468 tgcattgtactttaggattcgataataaggataaggat 31112505  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 563 - 689
Target Start/End: Complemental strand, 11178486 - 11178361
Alignment:
Q  563 aagggtactggatttgaaattcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagggttttgaaatacttatgtg 662  Q
    ||||||||  |||||||||||||||||||||||||| || ||||||  |||  | |||||| ||| |||   ||||||||||||||  |    || | ||    
T  11178486 aagggtacatgatttgaaattcaaaaatggcattaagtgaggttaa-agcattagtttcccactcaaaacataggattagggtttttgatgttttgtttg 11178388  T
Q  663 cattgtactttaggattagataataag 689  Q
    ||||||| |||||||||||||||||||    
T  11178387 cattgtagtttaggattagataataag 11178361  T

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Target: scaffold0524 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 663 - 698
Target Start/End: Complemental strand, 5161 - 5126
Alignment:
Q  663 cattgtactttaggattagataataaggataaggat 698  Q
    |||||||| |||||||||||||||||||||||||||    
T  5161 cattgtacattaggattagataataaggataaggat 5126  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 694
Target Start/End: Original strand, 37720060 - 37720093
Alignment:
Q  661 tgcattgtactttaggattagataataaggataa 694  Q
    ||||||||| ||||||||||||||||||||||||    
T  37720060 tgcattgtagtttaggattagataataaggataa 37720093  T

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