View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16437_low_11 (Length: 312)
Name: NF16437_low_11
Description: NF16437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16437_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 8944024 - 8943738
Alignment:
| Q |
11 |
agaatatcttgacaatgaagacaattgtcttgtattttgaacttgcctcgagcctttgggttaacttcttaaagagtggtttgataaacttgaatgtaat |
110 |
Q |
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| T |
8944024 |
agaatatcttgacaatgaagacaattgtctcgtattttgaacttgcctcgagcctttgggttaacttcttaaagagtggtttgataaacttgaatgtaat |
8943925 |
T |
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| Q |
111 |
tggtcatttctaaggatggtaaaacatatatattaaatgtaaagttcattaagttattttcaagtatttaggtatccttgttggggaaaatccttgtagg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8943924 |
tggtcatttctaaggatggtaaaacatatatattaaatgtaaagttcattaagttattttcaagtatttaggtatccttgttggggaaaatccttgcagg |
8943825 |
T |
|
| Q |
211 |
gtgaacatgtaagaactgttactcaaacttctcaccaattggcttgggtcttggtggaatacaaaatagctttggacacaaaatggt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8943824 |
gtgaacatgtaagaactgttactcaaacttctcaccaattgacttgggtcttggtggaatacaaaatagctttggacacaaaatggt |
8943738 |
T |
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