View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16437_low_12 (Length: 237)
Name: NF16437_low_12
Description: NF16437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16437_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 181239 - 181434
Alignment:
| Q |
1 |
tttcgggcatccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
181239 |
tttcgggcatccctctttcagagttcttgcactaatgatgtctagttgtggcaattttaggaacttagaaaataaaaaatttcattgtaattcttgtcat |
181338 |
T |
|
| Q |
101 |
attaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcct |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
181339 |
attaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgcagctcctcttgaactgttattttctgatgtttggggaccttctcct |
181434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1701666 - 1701886
Alignment:
| Q |
1 |
tttcgggcatccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcat |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||||| ||| |
|
|
| T |
1701666 |
tttcggtcatccctctttcagagttcttgcacaaatgatgtctacttgtggcaattttaggaatttagaaaataaaaaatttcattgtaattcttgccat |
1701765 |
T |
|
| Q |
101 |
attaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcctatca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1701766 |
attaataaaagtcataagcttcctttttctgtttcttctatcaaaaccacagctcctcttgaactgttattttctgatgtttggggaccctctcctatca |
1701865 |
T |
|
| Q |
201 |
cttcagttaatggttacaaat |
221 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
1701866 |
cttcagttcatggttacaaat |
1701886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University